Fitness for 5 genes in Methanococcus maripaludis JJ

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500 ntMMJJ_RS09090 and MMJJ_RS09095 are separated by 83 nucleotidesMMJJ_RS09095 and MMJJ_RS09100 overlap by 8 nucleotidesMMJJ_RS09100 and MMJJ_RS09105 are separated by 160 nucleotidesMMJJ_RS09105 and MMJJ_RS09110 are separated by 5 nucleotides MMJJ_RS09090: MMJJ_RS09090 - TetR/AcrR family transcriptional regulator, at 1,680,953 to 1,681,555 _RS09090 MMJJ_RS09095: MMJJ_RS09095 - MMPL family transporter, at 1,681,639 to 1,682,805 _RS09095 MMJJ_RS09100: MMJJ_RS09100 - COG1361 S-layer family protein, at 1,682,798 to 1,684,369 _RS09100 MMJJ_RS09105: MMJJ_RS09105 - AI-2E family transporter, at 1,684,530 to 1,685,495 _RS09105 MMJJ_RS09110: MMJJ_RS09110 - PEGA domain-containing protein, at 1,685,501 to 1,686,310 _RS09110
Group Condition MMJJ_RS09090 MMJJ_RS09095 MMJJ_RS09100 MMJJ_RS09105 MMJJ_RS09110
nitrogen source Formate N-free with 2mM Adenosine -1.5 -4.7 -3.0 +0.2 +0.3
stress McCas_formate_complete Rifampicin 0.25 mM -1.2 -4.1 -3.6 +0.2 +0.4
nitrogen source Formate N-free with 2mM Adenosine -1.2 -4.4 -2.9 -0.1 +0.3
nitrogen source Formate N-free with 2mM Adenosine -1.0 -3.9 -3.7 +0.0 +0.3
nitrogen source H2 N-free with 2mM Adenosine -1.6 -3.2 -2.9 -0.1 -0.1
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -1.0 -4.2 -2.4 -0.2 +0.1
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -0.7 -4.3 -2.5 -0.1 +0.0
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -0.6 -4.2 -2.4 -0.1 +0.1
stress McCas_formate_complete Rifampicin 0.25 mM -0.8 -3.3 -3.1 +0.1 +0.1
nutrient t1 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -0.7 -3.4 -2.1 +0.1 -0.1
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -0.4 -3.1 -2.1 -0.0 -0.0
iron Iron excess (2.5x) , H2 media -0.4 -2.7 -2.5 +0.1 +0.1
stress McCas_formate_complete Chlorpromazine 0.0166666666666667 mM -0.5 -2.8 -2.2 -0.1 +0.5
nitrogen source H2 N-free with 10mM Ammonium chloride -0.2 -2.4 -2.4 -0.0 +0.0
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE -0.2 -2.5 -2.2 -0.1 -0.0
stress McCas_formate_complete Antimycin A 0.01 mM -0.8 -3.1 -1.3 +0.1 +0.2
iron Iron limitation (0.2x), H2 media -0.3 -2.6 -2.1 +0.1 -0.0
nitrogen source H2 N-free with 2g/L casaminos +0.0 -2.4 -2.3 -0.1 -0.1
nutrient t1 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE -0.4 -2.6 -1.8 -0.0 +0.0
nitrogen source H2 N-free with 2mM Adenosine -1.5 -2.3 -1.1 -0.1 +0.2
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -0.3 -2.8 -1.7 -0.1 +0.1
nitrogen source H2 N-free with 2mM Adenosine -1.4 -2.3 -1.6 +0.2 +0.4
nitrogen source H2 N-free with 2g/L casaminos 10mM Ammonium chloride -0.1 -2.3 -2.0 +0.0 +0.2
iron control, 1x iron with casaminos and vitamins, formate media -0.1 -1.9 -1.5 +0.0 -0.1
nitrogen source formate N-free with 10mM Ammonium chloride -0.3 -1.7 -1.5 +0.0 -0.1
stress McCas_formate_complete Anhydrotetracycline 0.05 mM -0.5 -1.9 -1.6 +0.3 +0.3
nitrogen source H2 N-free with 10mM Ammonium chloride -0.2 -1.7 -1.7 +0.1 +0.1
nitrogen source H2 N-free with 10mM Ammonium chloride -0.2 -1.6 -1.5 -0.0 +0.1
stress McCas_formate_complete Nitrofurantoin 0.025 mM +0.5 -2.5 -0.6 -0.2 -0.1
stress McCas_formate_complete Polymyxin B sulfate 0.05 mM -0.3 -1.5 -1.3 +0.2 +0.3
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