Fitness for 5 genes in Methanococcus maripaludis JJ

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500 ntMMJJ_RS06395 and MMJJ_RS06400 are separated by 77 nucleotidesMMJJ_RS06400 and MMJJ_RS06405 are separated by 85 nucleotidesMMJJ_RS06405 and MMJJ_RS06410 are separated by 38 nucleotidesMMJJ_RS06410 and MMJJ_RS06415 are separated by 40 nucleotides MMJJ_RS06395: MMJJ_RS06395 - sugar phosphate isomerase/epimerase, at 1,183,966 to 1,184,772 _RS06395 MMJJ_RS06400: MMJJ_RS06400 - FumA C-terminus/TtdB family hydratase beta subunit, at 1,184,850 to 1,185,422 _RS06400 MMJJ_RS06405: MMJJ_RS06405 - 30S ribosomal protein S19, at 1,185,508 to 1,185,993 _RS06405 MMJJ_RS06410: MMJJ_RS06410 - 50S ribosomal protein L2, at 1,186,032 to 1,186,754 _RS06410 MMJJ_RS06415: MMJJ_RS06415 - 50S ribosomal protein L23, at 1,186,795 to 1,187,055 _RS06415
Group Condition MMJJ_RS06395 MMJJ_RS06400 MMJJ_RS06405 MMJJ_RS06410 MMJJ_RS06415
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -4.2 -1.9 N.D. N.D. N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -3.7 -2.4 N.D. N.D. N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -2.1 -3.3 N.D. N.D. N.D.
nitrogen source Formate N-free with 2mM Adenosine -2.7 -2.6 N.D. N.D. N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -2.1 -3.1 N.D. N.D. N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -3.4 -1.5 N.D. N.D. N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -1.9 -2.8 N.D. N.D. N.D.
nitrogen source Formate N-free with 2mM Adenosine -2.3 -2.3 N.D. N.D. N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -2.4 -2.2 N.D. N.D. N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -1.9 -2.5 N.D. N.D. N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -1.8 -2.3 N.D. N.D. N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -1.3 -2.7 N.D. N.D. N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -2.4 -1.5 N.D. N.D. N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -1.4 -2.5 N.D. N.D. N.D.
rich t2 H2 McCas, 5g/L bicarb, 40 psi H2CO2 -3.5 -0.3 N.D. N.D. N.D.
nitrogen source Formate N-free with 2mM Adenosine -2.4 -1.2 N.D. N.D. N.D.
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -2.4 -0.7 N.D. N.D. N.D.
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -1.1 -1.8 N.D. N.D. N.D.
nitrogen source H2 N-free with 2g/L casaminos 10mM Ammonium chloride -0.6 -2.1 N.D. N.D. N.D.
nitrogen source H2 N-free with 2g/L casaminos 10mM Ammonium chloride -0.7 -1.9 N.D. N.D. N.D.
iron Iron limitation (0.2x), H2 media -0.7 -1.9 N.D. N.D. N.D.
rich t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE -1.4 -1.1 N.D. N.D. N.D.
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE -1.4 -1.1 N.D. N.D. N.D.
iron control, 1x iron with casaminos and vitamins, H2 media -0.6 -1.9 N.D. N.D. N.D.
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE -1.8 -0.7 N.D. N.D. N.D.
iron Iron limitation (0.2x), H2 media -0.5 -2.0 N.D. N.D. N.D.
iron control, 1x iron with casaminos and vitamins, H2 media -0.5 -1.9 N.D. N.D. N.D.
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE -1.5 -0.8 N.D. N.D. N.D.
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE -1.4 -0.9 N.D. N.D. N.D.
stress McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM +2.3 +0.1 N.D. N.D. N.D.
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