Fitness for 5 genes in Methanococcus maripaludis JJ

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500 ntMMJJ_RS04600 and MMJJ_RS04605 are separated by 25 nucleotidesMMJJ_RS04605 and MMJJ_RS04610 are separated by 229 nucleotidesMMJJ_RS04610 and MMJJ_RS04615 are separated by 236 nucleotidesMMJJ_RS04615 and MMJJ_RS04620 are separated by 49 nucleotides MMJJ_RS04600: MMJJ_RS04600 - DNA-binding protein, at 857,323 to 857,682 _RS04600 MMJJ_RS04605: MMJJ_RS04605 - 30S ribosomal protein S19e, at 857,708 to 858,133 _RS04605 MMJJ_RS04610: MMJJ_RS04610 - ribosome assembly RNA-binding protein YhbY, at 858,363 to 858,746 _RS04610 MMJJ_RS04615: MMJJ_RS04615 - methanogenesis marker 3 protein, at 858,983 to 860,488 _RS04615 MMJJ_RS04620: MMJJ_RS04620 - homocitrate synthase family protein, at 860,538 to 861,698 _RS04620
Group Condition MMJJ_RS04600 MMJJ_RS04605 MMJJ_RS04610 MMJJ_RS04615 MMJJ_RS04620
nitrogen source H2 N-free with 2mM Adenosine N.D. N.D. -0.8 -2.3 -2.8
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE N.D. N.D. +0.6 -3.1 -3.1
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE N.D. N.D. +0.6 -3.0 -3.0
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE N.D. N.D. -1.2 -2.1 -1.6
stress McCas_formate_complete Ticarcillin 12.5 mM N.D. N.D. -0.7 -2.6 -1.5
iron Iron excess (2.5x) , H2 media N.D. N.D. -0.6 -2.2 -1.9
nutrient t1 formate McAA riboflavin dropout N.D. N.D. +0.2 -2.7 -2.2
iron Iron excess (2.5x) , H2 media N.D. N.D. -0.5 -2.2 -1.9
nutrient t1 formate McAA B12 dropout N.D. N.D. +0.1 -3.1 -1.4
nutrient t1 formate McAA thiamine dropout N.D. N.D. -0.1 -2.2 -2.0
nitrogen source H2 N-free with 10mM D-glucosamine N.D. N.D. -0.7 -2.1 -1.5
nutrient t1 formate McAA B12 dropout N.D. N.D. +0.1 -2.4 -1.9
stress McCas_formate_complete sulfate 125 mM N.D. N.D. -0.0 -2.0 -2.0
nutrient t1 formate McAA B12 dropout N.D. N.D. +0.5 -2.7 -1.8
nitrogen source H2 N-free with 2g/L casaminos 10mM Ammonium chloride N.D. N.D. -0.3 -2.4 -1.2
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE N.D. N.D. -1.1 -1.9 -0.9
nutrient t1 formate vitamin complete N.D. N.D. +0.1 -2.6 -1.4
nutrient t1 formate McAA nicotinic dropout N.D. N.D. +0.3 -1.9 -2.2
nutrient t1 formate McAA pantothenate dropout N.D. N.D. +0.2 -2.4 -1.3
nutrient t1 formate McAA riboflavin dropout N.D. N.D. +0.2 -2.3 -1.4
stress McCas_formate_complete sodium nitrite 0.125 mM N.D. N.D. +0.4 -2.8 -0.9
nutrient t1 formate McAA pantothenate dropout N.D. N.D. +0.3 -1.9 -1.7
nutrient t1 formate McAA p-aminobenzoic dropout N.D. N.D. +0.5 -2.3 -1.5
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE N.D. N.D. +0.6 -2.3 -1.5
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE N.D. N.D. +0.7 -2.7 -1.0
nitrogen source Formate N-free with 2mM Adenosine N.D. N.D. +0.7 -2.8 -0.5
stress McCas_formate_complete selenate 31.25 mM N.D. N.D. +0.8 -2.3 -1.1
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE N.D. N.D. -1.1 -1.8 +1.0
nitrogen source H2 N-free with 10mM D-glucosamine N.D. N.D. -0.8 +1.7 -1.7
stress McCas_formate_complete hypophosphite 62.5 mM N.D. N.D. -0.6 -1.6 +2.0
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