Fitness for 5 genes in Methanococcus maripaludis JJ

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500 ntMMJJ_RS00335 and MMJJ_RS00340 are separated by 10 nucleotidesMMJJ_RS00340 and MMJJ_RS00345 are separated by 8 nucleotidesMMJJ_RS00345 and MMJJ_RS00350 are separated by 8 nucleotidesMMJJ_RS00350 and MMJJ_RS00355 are separated by 113 nucleotides MMJJ_RS00335: MMJJ_RS00335 - chemotaxis protein CheW, at 65,256 to 65,699 _RS00335 MMJJ_RS00340: MMJJ_RS00340 - tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY, at 65,710 to 66,306 _RS00340 MMJJ_RS00345: MMJJ_RS00345 - 4-hydroxy-tetrahydrodipicolinate reductase, at 66,315 to 67,127 _RS00345 MMJJ_RS00350: MMJJ_RS00350 - phage infection protein, at 67,136 to 67,786 _RS00350 MMJJ_RS00355: MMJJ_RS00355 - ribonuclease P protein component 4, at 67,900 to 68,232 _RS00355
Group Condition MMJJ_RS00335 MMJJ_RS00340 MMJJ_RS00345 MMJJ_RS00350 MMJJ_RS00355
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -0.8 +0.0 -3.9 -1.3 -3.8
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -1.0 -0.5 -3.2 -1.3 -3.4
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -1.1 -0.6 -3.0 -1.3 -3.5
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE -0.5 -1.0 -3.8 -1.0 -3.1
rich t2 H2 McCas, 5g/L bicarb, 40 psi H2CO2 -0.7 -0.3 -3.1 -1.5 -3.5
nitrogen source H2 N-free with 10mM Ammonium chloride -0.7 -0.6 -2.8 -0.9 -3.9
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE -0.6 -1.0 -3.0 -0.9 -3.4
nitrogen source H2 N-free with 10mM Ammonium chloride -0.2 -0.4 -3.3 -0.9 -3.9
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE -0.5 -0.9 -3.0 -0.9 -3.3
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -0.2 -0.3 -3.5 -1.2 -3.3
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE -0.4 -0.4 -3.4 -0.6 -3.5
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -1.4 -0.6 -2.2 -0.7 -3.0
iron Iron excess (2.5x) , H2 media -0.7 -0.3 -2.0 -0.6 -4.3
nitrogen source H2 N-free with 10mM Ammonium chloride -0.3 -0.4 -3.3 -1.1 -2.8
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -0.4 -0.2 -2.0 -1.0 -3.9
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -0.2 -0.0 -2.0 -1.0 -4.0
nutrient t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE -0.3 -0.7 -2.7 -0.3 -3.2
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -0.4 -0.3 -2.1 -1.2 -3.2
stress McCas_formate_complete 2,2-dibromo-2-cyanoacetamide 0.00833333333333333 mM -0.9 -0.5 -2.2 -0.5 -3.0
stress McCas_formate_complete sodium nitrite 0.416666666666667 mM -0.3 -0.5 -2.8 -0.5 -2.7
nutrient t1 formate McAA folic dropout -0.3 -0.8 -1.0 -0.5 -4.2
nitrogen source H2 N-free with 2g/L casaminos 10mM Ammonium chloride -0.8 -0.4 -1.7 -0.7 -3.2
nitrogen source Formate N-free with 2mM Adenosine +0.2 -0.4 -3.6 -0.9 -1.9
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -0.3 -0.3 -1.7 -0.8 -3.5
rich t2 Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE -0.7 -0.9 -0.8 -0.4 -3.8
nitrogen source Formate N-free with 2mM Adenosine +0.5 -0.1 -3.0 -1.1 -2.9
nitrogen source H2 N-free with 10mM D-glucosamine -0.1 +0.4 -2.8 -0.9 -3.2
nitrogen source H2 N-free with 2g/L casaminos +0.2 -0.3 -1.2 -0.7 -4.4
nitrogen source H2 N-free with 10mM D-glucosamine -0.0 +0.6 -2.5 -0.9 -3.3
nitrogen source Formate N-free with 2mM Adenosine +0.7 -0.0 -3.0 -1.0 -2.7
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