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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18880 and LRK55_RS18885 overlap by 4 nucleotides
LRK55_RS18885 and LRK55_RS18890 are separated by 167 nucleotides
LRK55_RS18890 and LRK55_RS18895 are separated by 180 nucleotides
LRK55_RS18895 and LRK55_RS18900 are separated by 546 nucleotides
LRK55_RS18880: LRK55_RS18880 - hypothetical protein, at 116,650 to 116,958
_RS18880
LRK55_RS18885: LRK55_RS18885 - site-specific integrase, at 116,955 to 118,118
_RS18885
LRK55_RS18890: LRK55_RS18890 - DNA-binding protein, at 118,286 to 119,302
_RS18890
LRK55_RS18895: LRK55_RS18895 - PepSY domain-containing protein, at 119,483 to 119,785
_RS18895
LRK55_RS18900: LRK55_RS18900 - S24 family peptidase, at 120,332 to 120,712
_RS18900
Group
Condition
LRK55
_RS18880
LRK55
_RS18885
LRK55
_RS18890
LRK55
_RS18895
LRK55
_RS18900
pH
R2A_PIPES pH 4.25
-0.5
-0.2
-0.6
-0.6
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.4
-0.4
-0.3
-0.2
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.2
-0.2
-0.4
+0.0
pH
R2A_PIPES pH 4.25
-0.3
-0.3
-0.5
-0.6
+0.6
stress
R2A with Zinc chloride 2560 uM
-0.3
-0.2
-0.1
-0.4
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.2
-0.2
-0.1
-0.0
no stress control
no stress control
-0.2
-0.1
-0.2
-0.4
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.1
-0.2
-0.1
-0.0
no stress control
no stress control
-0.2
-0.2
-0.3
+0.0
+0.1
no stress control
no stress control
-0.3
-0.2
-0.2
+0.0
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.1
-0.2
-0.0
+0.1
pH
R2A_PIPES pH 4.5
-0.2
-0.1
-0.1
-0.0
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.2
-0.2
+0.2
+0.0
no stress control
no stress control
-0.2
-0.1
-0.2
-0.2
+0.3
no stress control
no stress control
-0.2
-0.2
-0.1
+0.0
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
-0.0
-0.1
+0.1
+0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-0.2
-0.2
+0.1
+0.2
no stress control
no stress control
-0.1
-0.1
-0.1
+0.0
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.1
+0.0
-0.0
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.1
+0.0
-0.3
+0.5
no stress control
no stress control
-0.1
-0.1
-0.1
-0.0
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.1
-0.4
+0.2
+0.5
pH
R2A_PIPES pH 4.5
-0.2
-0.1
-0.1
+0.1
+0.4
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LRK55_RS18890
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