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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18855 and LRK55_RS18860 are separated by 11 nucleotides
LRK55_RS18860 and LRK55_RS18865 overlap by 4 nucleotides
LRK55_RS18865 and LRK55_RS18870 are separated by 113 nucleotides
LRK55_RS18870 and LRK55_RS18875 are separated by 58 nucleotides
LRK55_RS18855: LRK55_RS18855 - c-type cytochrome, at 111,468 to 112,583
_RS18855
LRK55_RS18860: LRK55_RS18860 - copper resistance protein B, at 112,595 to 113,854
_RS18860
LRK55_RS18865: LRK55_RS18865 - copper resistance system multicopper oxidase, at 113,851 to 115,629
_RS18865
LRK55_RS18870: LRK55_RS18870 - hypothetical protein, at 115,743 to 116,150
_RS18870
LRK55_RS18875: LRK55_RS18875 - hypothetical protein, at 116,209 to 116,538
_RS18875
Group
Condition
LRK55
_RS18855
LRK55
_RS18860
LRK55
_RS18865
LRK55
_RS18870
LRK55
_RS18875
pH
R2A_PIPES pH 4.25
-0.6
+0.1
-0.4
-0.3
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.3
-0.3
-0.4
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.2
-0.2
-0.2
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.1
-0.2
-0.2
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.1
-0.1
-0.2
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.1
-0.1
-0.3
-0.3
no stress control
no stress control
-0.1
-0.2
-0.2
-0.0
-0.5
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.1
-0.2
-0.3
-0.1
no stress control
no stress control
-0.2
-0.2
-0.3
+0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
-0.1
-0.1
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.1
-0.2
-0.2
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.2
-0.2
+0.1
-0.2
pH
R2A_PIPES pH 4.5
-0.1
+0.1
-0.2
-0.0
-0.1
pH
R2A_PIPES pH 4.25
+0.0
+0.4
-0.3
-0.2
-0.1
no stress control
no stress control
+0.0
+0.0
-0.1
-0.1
-0.1
pH
R2A_PIPES pH 4.5
+0.0
+0.0
-0.0
+0.0
-0.2
no stress control
no stress control
+0.1
-0.1
-0.1
-0.1
+0.1
no stress control
no stress control
+0.2
-0.0
-0.1
+0.2
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.5
+0.0
-0.2
-0.2
-0.1
no stress control
no stress control
+0.1
+0.0
-0.0
+0.1
-0.1
no stress control
no stress control
+0.4
-0.1
-0.2
+0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.4
+0.0
-0.5
+0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.5
-0.1
-0.1
+0.1
-0.1
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