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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18760 and LRK55_RS18765 are separated by 72 nucleotides
LRK55_RS18765 and LRK55_RS18770 overlap by 4 nucleotides
LRK55_RS18770 and LRK55_RS18775 are separated by 13 nucleotides
LRK55_RS18775 and LRK55_RS18780 are separated by 72 nucleotides
LRK55_RS18760: LRK55_RS18760 - arsenical resistance protein ArsH, at 91,175 to 91,960
_RS18760
LRK55_RS18765: LRK55_RS18765 - arsenate reductase ArsC, at 92,033 to 92,542
_RS18765
LRK55_RS18770: LRK55_RS18770 - ACR3 family arsenite efflux transporter, at 92,539 to 93,627
_RS18770
LRK55_RS18775: LRK55_RS18775 - arsenate reductase ArsC, at 93,641 to 94,153
_RS18775
LRK55_RS18780: LRK55_RS18780 - metalloregulator ArsR/SmtB family transcription factor, at 94,226 to 94,588
_RS18780
Group
Condition
LRK55
_RS18760
LRK55
_RS18765
LRK55
_RS18770
LRK55
_RS18775
LRK55
_RS18780
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-1.3
-0.2
-0.2
+0.2
pH
R2A_PIPES pH 4.25
-0.3
-0.8
+0.2
-0.2
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.6
-0.1
-0.1
-0.3
pH
R2A_PIPES pH 4.25
-0.2
+0.5
+0.0
-0.3
-1.1
pH
R2A_PIPES pH 4.5
-0.1
+0.3
-0.3
-0.4
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.0
+0.1
+0.0
-0.8
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.5
+0.1
-0.1
+0.0
no stress control
no stress control
+0.0
-0.0
-0.0
-0.1
-0.2
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.6
+0.0
+0.0
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.0
-0.2
-0.1
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.1
+0.1
-0.1
-0.0
no stress control
no stress control
-0.0
+0.9
+0.2
-0.6
-0.5
no stress control
no stress control
+0.2
+0.1
+0.1
-0.2
-0.1
pH
R2A_PIPES pH 4.5
+0.1
+0.2
+0.1
+0.0
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.4
-0.1
-0.1
+0.0
no stress control
no stress control
+0.1
+0.5
+0.1
+0.1
-0.4
no stress control
no stress control
+0.2
+0.4
-0.0
+0.1
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.8
+0.2
-0.3
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
+0.9
+0.1
-0.1
+0.2
no stress control
no stress control
+0.1
+0.5
-0.0
+0.3
+0.0
no stress control
no stress control
+0.1
+0.5
+0.1
+0.1
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.5
+0.4
+0.1
+0.2
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
+1.0
+0.3
+0.4
+0.1
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