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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18720 and LRK55_RS18725 are separated by 31 nucleotides
LRK55_RS18725 and LRK55_RS18730 are separated by 94 nucleotides
LRK55_RS18730 and LRK55_RS18735 overlap by 4 nucleotides
LRK55_RS18735 and LRK55_RS18740 overlap by 1 nucleotides
LRK55_RS18720: LRK55_RS18720 - phosphatase PAP2 family protein, at 82,647 to 83,234
_RS18720
LRK55_RS18725: LRK55_RS18725 - cation diffusion facilitator family transporter, at 83,266 to 84,228
_RS18725
LRK55_RS18730: LRK55_RS18730 - P-II family nitrogen regulator, at 84,323 to 84,646
_RS18730
LRK55_RS18735: LRK55_RS18735 - CusA/CzcA family heavy metal efflux RND transporter, at 84,643 to 87,777
_RS18735
LRK55_RS18740: LRK55_RS18740 - efflux RND transporter periplasmic adaptor subunit, at 87,777 to 88,874
_RS18740
Group
Condition
LRK55
_RS18720
LRK55
_RS18725
LRK55
_RS18730
LRK55
_RS18735
LRK55
_RS18740
stress
R2A with Zinc chloride 2560 uM
-0.4
-4.0
-1.4
-3.8
-4.3
stress
R2A with Zinc chloride 2560 uM
-0.2
-4.0
-1.3
-3.4
-3.4
no stress control
no stress control
-0.5
-0.3
-0.7
-0.0
-0.5
pH
R2A_PIPES pH 4.25
-0.8
-0.5
+0.3
+0.1
-1.0
pH
R2A_PIPES pH 4.5
-0.6
-0.2
-0.5
-0.1
-0.3
pH
R2A_PIPES pH 4.25
-0.6
+0.0
-0.8
-0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.2
-0.6
-0.2
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
-0.1
-0.0
-0.2
-0.1
no stress control
no stress control
+0.0
-0.1
-0.1
-0.1
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.1
-0.1
+0.3
-0.4
no stress control
no stress control
-0.3
+0.1
-0.2
+0.2
-0.2
no stress control
no stress control
+0.1
-0.2
-0.2
-0.2
-0.0
no stress control
no stress control
+0.1
-0.2
-0.0
-0.1
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.0
-0.0
-0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.1
-0.2
+0.0
-0.1
pH
R2A_PIPES pH 4.5
-0.1
-0.0
+0.0
-0.1
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
+0.1
-0.3
+0.0
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
+0.1
-0.0
-0.1
no stress control
no stress control
+0.0
-0.0
-0.0
+0.2
-0.1
no stress control
no stress control
+0.1
+0.1
+0.0
+0.0
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-0.1
+0.3
-0.2
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-1.9
+1.0
+1.0
+1.9
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-2.2
+1.7
+1.6
+2.3
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