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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18540 and LRK55_RS18545 are separated by 62 nucleotides
LRK55_RS18545 and LRK55_RS18550 overlap by 1 nucleotides
LRK55_RS18550 and LRK55_RS18555 are separated by 229 nucleotides
LRK55_RS18555 and LRK55_RS18560 are separated by 12 nucleotides
LRK55_RS18540: LRK55_RS18540 - hypothetical protein, at 41,610 to 42,470
_RS18540
LRK55_RS18545: LRK55_RS18545 - AAA family ATPase, at 42,533 to 43,639
_RS18545
LRK55_RS18550: LRK55_RS18550 - hypothetical protein, at 43,639 to 44,295
_RS18550
LRK55_RS18555: LRK55_RS18555 - DUF3150 domain-containing protein, at 44,525 to 45,535
_RS18555
LRK55_RS18560: LRK55_RS18560 - VWA domain-containing protein, at 45,548 to 47,467
_RS18560
Group
Condition
LRK55
_RS18540
LRK55
_RS18545
LRK55
_RS18550
LRK55
_RS18555
LRK55
_RS18560
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.2
-0.4
-0.4
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.1
-0.1
-0.7
-0.1
pH
R2A_PIPES pH 4.25
+0.3
-0.5
+0.1
-0.8
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.0
-0.0
-0.1
-0.3
no stress control
no stress control
-0.1
-0.2
+0.0
+0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.0
+0.1
-0.4
+0.1
no stress control
no stress control
+0.2
-0.1
+0.2
-0.4
-0.1
no stress control
no stress control
+0.1
+0.0
-0.0
-0.0
-0.1
no stress control
no stress control
+0.2
-0.1
+0.4
-0.1
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.0
+0.1
-0.3
+0.1
no stress control
no stress control
+0.0
+0.1
+0.3
-0.2
-0.1
pH
R2A_PIPES pH 4.25
-0.1
-0.0
-0.1
+0.4
-0.1
no stress control
no stress control
+0.1
+0.1
+0.2
-0.2
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
+0.0
+0.1
+0.1
+0.1
pH
R2A_PIPES pH 4.5
+0.3
+0.2
+0.4
-0.0
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.1
+0.4
+0.0
+0.2
no stress control
no stress control
+0.3
+0.2
+0.1
-0.0
+0.1
pH
R2A_PIPES pH 4.5
+0.1
+0.2
+0.4
+0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
-0.1
+0.4
+0.2
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.1
+0.2
+0.2
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.1
+0.5
+0.0
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.4
+0.3
+0.6
-0.0
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.4
+0.1
+0.7
-0.1
+0.3
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