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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18450 and LRK55_RS18455 overlap by 4 nucleotides
LRK55_RS18455 and LRK55_RS18460 are separated by 260 nucleotides
LRK55_RS18460 and LRK55_RS18465 overlap by 23 nucleotides
LRK55_RS18465 and LRK55_RS18470 overlap by 1 nucleotides
LRK55_RS18450: LRK55_RS18450 - hypothetical protein, at 26,690 to 27,250
_RS18450
LRK55_RS18455: LRK55_RS18455 - DUF4400 domain-containing protein, at 27,247 to 27,900
_RS18455
LRK55_RS18460: LRK55_RS18460 - hypothetical protein, at 28,161 to 28,307
_RS18460
LRK55_RS18465: LRK55_RS18465 - ATP-dependent helicase, at 28,285 to 30,018
_RS18465
LRK55_RS18470: LRK55_RS18470 - hypothetical protein, at 30,018 to 30,749
_RS18470
Group
Condition
LRK55
_RS18450
LRK55
_RS18455
LRK55
_RS18460
LRK55
_RS18465
LRK55
_RS18470
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.7
-0.3
-1.2
-0.0
-0.2
pH
R2A_PIPES pH 4.25
-0.2
-0.8
-0.2
+0.2
-0.4
pH
R2A_PIPES pH 4.25
+0.7
-0.4
-1.6
+0.4
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.0
-0.5
+0.0
-0.2
no stress control
no stress control
-0.0
-0.3
-0.1
-0.1
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.1
-0.1
-0.1
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.2
-0.4
+0.0
-0.3
no stress control
no stress control
-0.1
-0.0
-0.1
-0.0
-0.1
no stress control
no stress control
+0.4
-0.2
-0.2
+0.1
-0.3
no stress control
no stress control
-0.0
+0.1
-0.3
+0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.1
+0.1
+0.2
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
-0.0
+0.5
+0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.5
+0.1
+0.3
+0.1
-0.0
no stress control
no stress control
-0.0
+0.3
-0.3
+0.2
-0.1
no stress control
no stress control
+0.0
+0.1
-0.1
+0.2
-0.0
no stress control
no stress control
-0.1
-0.1
-0.1
+0.2
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.4
-0.0
+0.1
-0.3
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.1
+0.5
+0.0
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.4
+0.3
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.3
+0.3
+0.3
-0.1
pH
R2A_PIPES pH 4.5
+0.5
-0.4
+0.7
+0.3
-0.3
pH
R2A_PIPES pH 4.5
+0.4
+0.1
+0.5
+0.3
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.7
+0.7
-0.0
+0.1
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