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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18285 and LRK55_RS18290 are separated by 9 nucleotides
LRK55_RS18290 and LRK55_RS18295 are separated by 47 nucleotides
LRK55_RS18295 and LRK55_RS18300 are separated by 79 nucleotides
LRK55_RS18300 and LRK55_RS18305 are separated by 213 nucleotides
LRK55_RS18285: LRK55_RS18285 - cyclin-dependent kinase inhibitor 3 family protein, at 3,963,898 to 3,964,446
_RS18285
LRK55_RS18290: LRK55_RS18290 - enhanced serine sensitivity protein SseB C-terminal domain-containing protein, at 3,964,456 to 3,965,199
_RS18290
LRK55_RS18295: LRK55_RS18295 - hypothetical protein, at 3,965,247 to 3,966,107
_RS18295
LRK55_RS18300: LRK55_RS18300 - helix-turn-helix transcriptional regulator, at 3,966,187 to 3,966,474
_RS18300
LRK55_RS18305: LRK55_RS18305 - IS21 family transposase, at 3,966,688 to 3,966,954
_RS18305
Group
Condition
LRK55
_RS18285
LRK55
_RS18290
LRK55
_RS18295
LRK55
_RS18300
LRK55
_RS18305
stress
R2A with Zinc chloride 2560 uM
-0.6
-0.7
-0.8
-0.6
-0.5
stress
R2A with Zinc chloride 2560 uM
-0.3
-0.5
-0.7
-0.5
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.5
-0.6
-0.5
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
-0.2
-0.5
-0.5
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.4
-0.5
-0.4
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.2
-0.5
-0.4
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.3
-0.4
-0.2
-0.3
pH
R2A_PIPES pH 4.25
-0.0
-0.1
-0.3
-0.7
-0.3
pH
R2A_PIPES pH 4.25
-0.2
-0.3
-0.3
-0.1
-0.5
no stress control
no stress control
-0.3
-0.3
-0.3
-0.1
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.1
-0.5
-0.3
-0.2
pH
R2A_PIPES pH 4.5
-0.2
-0.1
-0.3
-0.2
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
+0.0
-0.5
-0.1
-0.2
no stress control
no stress control
-0.1
-0.2
-0.3
-0.2
-0.2
no stress control
no stress control
-0.0
-0.1
-0.3
-0.3
-0.2
pH
R2A_PIPES pH 4.5
-0.1
-0.2
-0.4
-0.1
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
+0.0
-0.1
-0.1
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.0
-0.4
-0.1
-0.2
no stress control
no stress control
-0.0
-0.1
-0.2
-0.3
-0.2
no stress control
no stress control
+0.1
-0.0
-0.2
-0.5
-0.1
no stress control
no stress control
+0.0
+0.1
-0.4
-0.1
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
+0.2
-0.3
-0.3
-0.1
no stress control
no stress control
+0.0
+0.0
-0.2
-0.2
-0.1
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