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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18215 and LRK55_RS18220 are separated by 321 nucleotides
LRK55_RS18220 and LRK55_RS18225 are separated by 22 nucleotides
LRK55_RS18225 and LRK55_RS18230 are separated by 9 nucleotides
LRK55_RS18230 and LRK55_RS18235 are separated by 24 nucleotides
LRK55_RS18215: LRK55_RS18215 - DHHA1 domain-containing protein, at 3,951,710 to 3,952,567
_RS18215
LRK55_RS18220: LRK55_RS18220 - integrase, at 3,952,889 to 3,953,056
_RS18220
LRK55_RS18225: LRK55_RS18225 - DUF3267 domain-containing protein, at 3,953,079 to 3,953,669
_RS18225
LRK55_RS18230: LRK55_RS18230 - hypothetical protein, at 3,953,679 to 3,954,362
_RS18230
LRK55_RS18235: LRK55_RS18235 - hypothetical protein, at 3,954,387 to 3,955,685
_RS18235
Group
Condition
LRK55
_RS18215
LRK55
_RS18220
LRK55
_RS18225
LRK55
_RS18230
LRK55
_RS18235
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.5
-1.0
-0.8
-1.0
pH
R2A_PIPES pH 4.25
-0.7
-0.6
-0.1
-0.6
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.5
-0.3
-0.6
-0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.2
-0.5
-0.6
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.5
-0.2
-0.1
-0.6
-0.5
stress
R2A with Zinc chloride 2560 uM
+0.2
-0.3
-0.7
-0.5
-0.7
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.3
-0.4
-0.4
-0.3
pH
R2A_PIPES pH 4.25
-0.1
-0.7
+0.1
-0.3
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
-0.1
-0.5
-0.4
-0.5
no stress control
no stress control
-0.2
-0.2
-0.3
-0.2
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.1
-0.2
-0.4
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.5
-0.1
-0.4
+0.0
no stress control
no stress control
+0.2
-0.2
-0.3
-0.4
-0.3
pH
R2A_PIPES pH 4.5
-0.1
+0.0
-0.1
-0.3
-0.4
no stress control
no stress control
-0.1
-0.1
-0.2
-0.3
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
-0.1
-0.2
-0.4
-0.5
pH
R2A_PIPES pH 4.5
+0.3
+0.1
-0.2
-0.4
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
+0.1
-0.2
-0.1
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.5
-0.0
-0.1
-0.4
-0.4
no stress control
no stress control
+0.3
-0.2
-0.1
-0.2
-0.1
no stress control
no stress control
+0.5
-0.1
-0.3
-0.2
-0.2
no stress control
no stress control
+0.4
-0.1
-0.1
-0.3
-0.3
no stress control
no stress control
+0.2
-0.0
-0.1
-0.2
-0.2
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LRK55_RS18225
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