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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18060 and LRK55_RS18065 are separated by 2 nucleotides
LRK55_RS18065 and LRK55_RS18070 overlap by 11 nucleotides
LRK55_RS18070 and LRK55_RS18075 are separated by 5 nucleotides
LRK55_RS18075 and LRK55_RS18080 are separated by 153 nucleotides
LRK55_RS18060: LRK55_RS18060 - nucleoside-diphosphate kinase, at 3,918,151 to 3,918,576
_RS18060
LRK55_RS18065: LRK55_RS18065 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 3,918,579 to 3,919,709
_RS18065
LRK55_RS18070: LRK55_RS18070 - type IV pilus biogenesis/stability protein PilW, at 3,919,699 to 3,920,487
_RS18070
LRK55_RS18075: LRK55_RS18075 - helix-turn-helix domain-containing protein, at 3,920,493 to 3,921,479
_RS18075
LRK55_RS18080: LRK55_RS18080 - tetratricopeptide repeat protein, at 3,921,633 to 3,922,283
_RS18080
Group
Condition
LRK55
_RS18060
LRK55
_RS18065
LRK55
_RS18070
LRK55
_RS18075
LRK55
_RS18080
pH
R2A_PIPES pH 4.25
N.D.
-0.7
-0.5
-2.3
-3.0
pH
R2A_PIPES pH 4.5
N.D.
-0.6
-0.6
-1.0
-3.5
stress
R2A with Zinc chloride 2560 uM
N.D.
-0.3
-0.4
-1.1
-3.8
stress
R2A with Zinc chloride 2560 uM
N.D.
-0.2
-0.3
-1.0
-3.9
pH
R2A_PIPES pH 4.25
N.D.
-0.5
-0.4
-1.3
-2.7
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
-0.3
-0.2
-0.3
-3.7
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
-0.7
-0.5
-0.7
-2.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
-0.3
-0.0
-1.0
-2.8
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
-0.4
-0.1
-0.6
-3.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
+0.0
-0.2
-0.2
-3.7
no stress control
no stress control
N.D.
-0.2
-0.1
-0.4
-3.1
no stress control
no stress control
N.D.
-0.1
-0.1
-0.2
-3.5
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
-0.5
-0.2
-0.4
-2.7
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
+0.2
-0.0
-0.3
-3.6
no stress control
no stress control
N.D.
-0.4
-0.2
-0.1
-3.0
pH
R2A_PIPES pH 4.5
N.D.
-0.5
-0.4
-0.9
-1.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
-0.4
-0.2
-0.4
-2.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
-0.4
-0.1
-0.4
-2.5
no stress control
no stress control
N.D.
-0.5
-0.1
-0.1
-2.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
-0.3
+0.2
-0.3
-2.9
no stress control
no stress control
N.D.
-0.2
-0.1
-0.1
-2.9
no stress control
no stress control
N.D.
-0.4
-0.1
-0.6
-2.0
no stress control
no stress control
N.D.
-0.1
-0.1
+0.1
-2.5
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