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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS18010 and LRK55_RS18015 are separated by 59 nucleotides
LRK55_RS18015 and LRK55_RS18020 are separated by 115 nucleotides
LRK55_RS18020 and LRK55_RS18025 are separated by 211 nucleotides
LRK55_RS18025 and LRK55_RS18030 are separated by 134 nucleotides
LRK55_RS18010: LRK55_RS18010 - hypothetical protein, at 3,907,637 to 3,908,239
_RS18010
LRK55_RS18015: LRK55_RS18015 - hypothetical protein, at 3,908,299 to 3,908,889
_RS18015
LRK55_RS18020: LRK55_RS18020 - cold shock domain-containing protein, at 3,909,005 to 3,909,562
_RS18020
LRK55_RS18025: LRK55_RS18025 - Fic family protein, at 3,909,774 to 3,910,760
_RS18025
LRK55_RS18030: LRK55_RS18030 - redoxin domain-containing protein, at 3,910,895 to 3,911,398
_RS18030
Group
Condition
LRK55
_RS18010
LRK55
_RS18015
LRK55
_RS18020
LRK55
_RS18025
LRK55
_RS18030
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.0
-0.8
-0.1
-0.3
no stress control
no stress control
-0.2
-0.1
-0.5
-0.2
-0.1
no stress control
no stress control
-0.2
-0.0
-0.6
-0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.6
-0.1
-0.3
+0.1
-0.2
no stress control
no stress control
-0.1
+0.0
-0.3
-0.3
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-0.2
-0.3
-0.0
-0.4
no stress control
no stress control
-0.1
+0.1
-0.3
-0.2
-0.0
no stress control
no stress control
+0.2
-0.1
-0.4
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.1
-0.3
+0.0
+0.0
no stress control
no stress control
+0.2
-0.1
-0.6
-0.1
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.1
-0.6
-0.0
-0.0
pH
R2A_PIPES pH 4.25
+0.5
+0.1
-1.2
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.4
-0.0
-0.1
+0.2
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
+0.0
-0.4
-0.1
-0.0
pH
R2A_PIPES pH 4.25
+0.1
+0.1
-0.5
+0.1
-0.0
stress
R2A with Zinc chloride 2560 uM
+0.0
+0.1
-0.1
-0.1
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.5
+0.2
+0.1
-0.0
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.4
-0.1
+0.0
-0.2
-0.3
no stress control
no stress control
+0.1
+0.0
-0.5
+0.1
+0.2
pH
R2A_PIPES pH 4.5
+0.3
+0.1
-0.3
-0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
+0.3
-0.1
-0.1
+0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
+0.2
-0.4
+0.0
-0.0
pH
R2A_PIPES pH 4.5
+0.4
+0.0
-0.2
+0.0
+0.1
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