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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS17910 and LRK55_RS17915 overlap by 14 nucleotides
LRK55_RS17915 and LRK55_RS17920 overlap by 4 nucleotides
LRK55_RS17920 and LRK55_RS17925 are separated by 78 nucleotides
LRK55_RS17925 and LRK55_RS17930 overlap by 4 nucleotides
LRK55_RS17910: LRK55_RS17910 - glycosyl transferase family 4, at 3,887,576 to 3,888,598
_RS17910
LRK55_RS17915: LRK55_RS17915 - nucleoside-diphosphate sugar epimerase/dehydratase, at 3,888,585 to 3,890,483
_RS17915
LRK55_RS17920: LRK55_RS17920 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 3,890,480 to 3,891,355
_RS17920
LRK55_RS17925: LRK55_RS17925 - FAD-binding oxidoreductase, at 3,891,434 to 3,892,723
_RS17925
LRK55_RS17930: LRK55_RS17930 - tRNA-binding protein, at 3,892,720 to 3,893,067
_RS17930
Group
Condition
LRK55
_RS17910
LRK55
_RS17915
LRK55
_RS17920
LRK55
_RS17925
LRK55
_RS17930
pH
R2A_PIPES pH 4.25
-3.4
-3.8
N.D.
+1.0
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-3.8
-3.0
N.D.
+0.5
+0.2
pH
R2A_PIPES pH 4.25
-3.4
-3.6
N.D.
+0.9
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.6
-2.9
N.D.
+0.4
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-3.7
-3.0
N.D.
+0.5
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.9
-2.3
N.D.
+0.4
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.4
-2.9
N.D.
+0.5
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.4
-2.8
N.D.
+0.5
+0.2
stress
R2A with Zinc chloride 2560 uM
-3.1
-2.1
N.D.
+0.4
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.6
-2.4
N.D.
+0.2
-0.0
no stress control
no stress control
-2.9
-2.0
N.D.
+0.2
+0.0
stress
R2A with Zinc chloride 2560 uM
-3.0
-1.8
N.D.
+0.5
-0.2
pH
R2A_PIPES pH 4.5
-2.9
-2.1
N.D.
+0.4
+0.3
pH
R2A_PIPES pH 4.5
-2.9
-2.1
N.D.
+0.6
+0.2
no stress control
no stress control
-2.5
-1.9
N.D.
+0.3
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.8
-1.9
N.D.
+0.3
+0.2
no stress control
no stress control
-2.7
-1.9
N.D.
+0.2
+0.1
no stress control
no stress control
-2.5
-2.0
N.D.
+0.2
+0.1
no stress control
no stress control
-2.3
-2.0
N.D.
+0.3
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-2.6
-1.6
N.D.
+0.3
+0.1
no stress control
no stress control
-2.5
-1.7
N.D.
+0.3
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-2.5
-1.4
N.D.
+0.4
-0.0
no stress control
no stress control
-1.9
-1.5
N.D.
+0.2
+0.2
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