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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS17895 and LRK55_RS17900 are separated by 168 nucleotides
LRK55_RS17900 and LRK55_RS17905 overlap by 4 nucleotides
LRK55_RS17905 and LRK55_RS17910 are separated by 35 nucleotides
LRK55_RS17910 and LRK55_RS17915 overlap by 14 nucleotides
LRK55_RS17895: LRK55_RS17895 - integration host factor subunit beta, at 3,885,655 to 3,885,954
_RS17895
LRK55_RS17900: LRK55_RS17900 - lipopolysaccharide assembly protein LapA domain-containing protein, at 3,886,123 to 3,886,371
_RS17900
LRK55_RS17905: LRK55_RS17905 - lipopolysaccharide assembly protein LapB, at 3,886,368 to 3,887,540
_RS17905
LRK55_RS17910: LRK55_RS17910 - glycosyl transferase family 4, at 3,887,576 to 3,888,598
_RS17910
LRK55_RS17915: LRK55_RS17915 - nucleoside-diphosphate sugar epimerase/dehydratase, at 3,888,585 to 3,890,483
_RS17915
Group
Condition
LRK55
_RS17895
LRK55
_RS17900
LRK55
_RS17905
LRK55
_RS17910
LRK55
_RS17915
pH
R2A_PIPES pH 4.25
N.D.
N.D.
-1.5
-3.4
-3.6
pH
R2A_PIPES pH 4.25
N.D.
N.D.
-1.1
-3.4
-3.8
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
N.D.
-1.7
-3.6
-2.9
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
N.D.
-1.2
-3.8
-3.0
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
N.D.
-1.1
-3.7
-3.0
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
N.D.
-1.5
-3.4
-2.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
N.D.
-1.7
-2.6
-2.4
pH
R2A_PIPES pH 4.5
N.D.
N.D.
-1.5
-2.9
-2.1
pH
R2A_PIPES pH 4.5
N.D.
N.D.
-1.4
-2.9
-2.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
N.D.
-1.5
-2.8
-1.9
no stress control
no stress control
N.D.
N.D.
-1.2
-2.9
-2.0
no stress control
no stress control
N.D.
N.D.
-1.3
-2.7
-1.9
no stress control
no stress control
N.D.
N.D.
-1.2
-2.5
-2.0
stress
R2A with Zinc chloride 2560 uM
N.D.
N.D.
-0.4
-3.1
-2.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
N.D.
+0.6
-3.4
-2.9
no stress control
no stress control
N.D.
N.D.
-1.3
-2.5
-1.7
no stress control
no stress control
N.D.
N.D.
-1.2
-2.3
-2.0
no stress control
no stress control
N.D.
N.D.
-1.1
-2.5
-1.9
stress
R2A with Zinc chloride 2560 uM
N.D.
N.D.
-0.5
-3.0
-1.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
N.D.
+1.3
-3.9
-2.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
N.D.
-0.7
-2.6
-1.6
no stress control
no stress control
N.D.
N.D.
-1.1
-1.9
-1.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
N.D.
-0.3
-2.5
-1.4
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