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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS17300 and LRK55_RS17305 are separated by 66 nucleotides
LRK55_RS17305 and LRK55_RS17310 are separated by 270 nucleotides
LRK55_RS17310 and LRK55_RS17315 are separated by 165 nucleotides
LRK55_RS17315 and LRK55_RS17320 overlap by 1 nucleotides
LRK55_RS17300: LRK55_RS17300 - CBASS cGAMP-activated phospholipase, at 3,751,613 to 3,752,620
_RS17300
LRK55_RS17305: LRK55_RS17305 - NAD(P)/FAD-dependent oxidoreductase, at 3,752,687 to 3,754,033
_RS17305
LRK55_RS17310: LRK55_RS17310 - Tn3 family transposase, at 3,754,304 to 3,757,273
_RS17310
LRK55_RS17315: LRK55_RS17315 - cation diffusion facilitator family transporter, at 3,757,439 to 3,758,344
_RS17315
LRK55_RS17320: LRK55_RS17320 - cation transporter, at 3,758,344 to 3,758,964
_RS17320
Group
Condition
LRK55
_RS17300
LRK55
_RS17305
LRK55
_RS17310
LRK55
_RS17315
LRK55
_RS17320
pH
R2A_PIPES pH 4.25
-0.2
-1.0
-0.6
-0.1
-0.7
stress
R2A with Zinc chloride 2560 uM
-0.4
-0.5
-0.5
-0.9
-0.4
pH
R2A_PIPES pH 4.5
-0.4
-0.7
-0.5
-0.3
-0.7
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
-0.6
-0.4
-0.3
-0.6
pH
R2A_PIPES pH 4.5
-0.4
-0.8
-0.6
-0.5
-0.1
pH
R2A_PIPES pH 4.25
-0.6
-0.4
-0.8
+0.2
-0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.5
-0.4
-0.3
-0.3
-0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
-0.6
-0.3
-0.2
-0.4
no stress control
no stress control
-0.4
-0.4
-0.2
-0.3
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
-0.4
-0.4
-0.0
-0.5
no stress control
no stress control
-0.1
-0.4
-0.2
-0.1
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
-0.2
-0.3
-0.1
-0.5
stress
R2A with Zinc chloride 2560 uM
-0.3
-0.6
-0.3
-0.6
+0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.3
-0.4
-0.0
-0.2
no stress control
no stress control
-0.2
-0.2
-0.3
-0.5
+0.0
no stress control
no stress control
-0.2
-0.1
-0.2
-0.4
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
-0.4
-0.3
-0.3
-0.4
no stress control
no stress control
-0.2
-0.1
-0.2
-0.3
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.7
+0.1
-0.3
-0.4
+0.3
no stress control
no stress control
-0.1
-0.3
-0.3
-0.3
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.2
-0.3
-0.3
-0.2
no stress control
no stress control
-0.2
-0.0
-0.3
-0.3
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.2
-0.2
-0.0
-0.4
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