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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS17185 and LRK55_RS17190 overlap by 4 nucleotides
LRK55_RS17190 and LRK55_RS17195 overlap by 4 nucleotides
LRK55_RS17195 and LRK55_RS17200 overlap by 4 nucleotides
LRK55_RS17200 and LRK55_RS17205 are separated by 109 nucleotides
LRK55_RS17185: LRK55_RS17185 - NADH-quinone oxidoreductase subunit H, at 3,730,744 to 3,731,688
_RS17185
LRK55_RS17190: LRK55_RS17190 - hypothetical protein, at 3,731,685 to 3,732,374
_RS17190
LRK55_RS17195: LRK55_RS17195 - proton-conducting transporter membrane subunit, at 3,732,371 to 3,733,852
_RS17195
LRK55_RS17200: LRK55_RS17200 - nickel-dependent hydrogenase large subunit, at 3,733,849 to 3,735,327
_RS17200
LRK55_RS17205: LRK55_RS17205 - 4Fe-4S binding protein, at 3,735,437 to 3,736,144
_RS17205
Group
Condition
LRK55
_RS17185
LRK55
_RS17190
LRK55
_RS17195
LRK55
_RS17200
LRK55
_RS17205
pH
R2A_PIPES pH 4.25
-0.8
-0.0
-0.4
-0.5
-0.2
pH
R2A_PIPES pH 4.5
-0.7
+0.1
-0.4
-0.7
-0.1
pH
R2A_PIPES pH 4.25
-0.6
-0.7
-0.4
-0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.5
+0.0
-0.2
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
-0.4
-0.2
-0.3
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.2
+0.0
-0.2
-0.2
+0.6
no stress control
no stress control
-0.5
+0.0
-0.0
-0.1
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.4
-0.1
-0.1
-0.1
-0.2
pH
R2A_PIPES pH 4.5
-0.3
+0.1
-0.2
-0.1
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
-0.1
+0.0
-0.4
-0.0
no stress control
no stress control
-0.2
-0.1
-0.2
-0.3
-0.0
no stress control
no stress control
-0.4
+0.1
-0.2
-0.2
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
+0.0
-0.2
-0.2
-0.0
no stress control
no stress control
-0.3
-0.0
-0.1
-0.3
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.3
+0.1
-0.1
-0.1
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.0
-0.1
-0.2
-0.3
no stress control
no stress control
-0.3
-0.4
+0.1
-0.2
+0.2
no stress control
no stress control
-0.0
+0.1
-0.1
-0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.2
-0.2
+0.1
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.4
+0.3
-0.0
-0.3
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.0
-0.0
-0.2
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.1
-0.0
-0.3
+0.3
no stress control
no stress control
-0.2
+0.0
+0.1
-0.0
+0.3
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