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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS17110 and LRK55_RS17115 are separated by 34 nucleotides
LRK55_RS17115 and LRK55_RS17120 are separated by 24 nucleotides
LRK55_RS17120 and LRK55_RS17125 are separated by 12 nucleotides
LRK55_RS17125 and LRK55_RS17130 overlap by 4 nucleotides
LRK55_RS17110: LRK55_RS17110 - phosphopyruvate hydratase, at 3,711,721 to 3,713,001
_RS17110
LRK55_RS17115: LRK55_RS17115 - DEAD/DEAH box helicase, at 3,713,036 to 3,716,401
_RS17115
LRK55_RS17120: LRK55_RS17120 - inorganic diphosphatase, at 3,716,426 to 3,716,962
_RS17120
LRK55_RS17125: LRK55_RS17125 - histidine phosphatase family protein, at 3,716,975 to 3,717,589
_RS17125
LRK55_RS17130: LRK55_RS17130 - hypothetical protein, at 3,717,586 to 3,718,029
_RS17130
Group
Condition
LRK55
_RS17110
LRK55
_RS17115
LRK55
_RS17120
LRK55
_RS17125
LRK55
_RS17130
pH
R2A_PIPES pH 4.5
-0.6
+0.0
+0.0
-0.7
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.0
-0.2
-0.5
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.2
+0.1
-0.1
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
-0.1
-0.3
-0.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.0
-0.1
-0.6
+0.1
no stress control
no stress control
-0.1
-0.1
-0.0
-0.2
-0.3
pH
R2A_PIPES pH 4.5
-0.3
+0.1
+0.0
-0.2
-0.1
no stress control
no stress control
-0.3
-0.4
-0.0
+0.1
+0.0
no stress control
no stress control
-0.1
-0.2
+0.0
+0.2
-0.1
no stress control
no stress control
-0.3
-0.1
+0.1
+0.2
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.1
-0.1
-0.0
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
+0.1
+0.3
+0.4
-0.6
pH
R2A_PIPES pH 4.25
-0.6
-0.1
+0.3
+0.4
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.0
-0.1
+0.1
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.0
+0.0
-0.1
+0.4
no stress control
no stress control
-0.1
+0.0
+0.2
-0.0
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.1
+0.1
+0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.0
-0.0
-0.1
+0.5
no stress control
no stress control
-0.2
+0.1
+0.1
-0.0
+0.3
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.1
+0.3
+0.0
+0.2
no stress control
no stress control
+0.1
-0.0
+0.2
+0.1
+0.2
pH
R2A_PIPES pH 4.25
-0.3
+0.0
+0.4
+0.2
+0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.2
+0.3
-0.3
+0.5
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