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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS17055 and LRK55_RS17060 are separated by 155 nucleotides
LRK55_RS17060 and LRK55_RS17065 are separated by 1 nucleotides
LRK55_RS17065 and LRK55_RS17070 are separated by 145 nucleotides
LRK55_RS17070 and LRK55_RS17075 overlap by 4 nucleotides
LRK55_RS17055: LRK55_RS17055 - MFS transporter, at 3,693,824 to 3,695,002
_RS17055
LRK55_RS17060: LRK55_RS17060 - heavy metal response regulator transcription factor, at 3,695,158 to 3,695,832
_RS17060
LRK55_RS17065: LRK55_RS17065 - heavy metal sensor histidine kinase, at 3,695,834 to 3,697,270
_RS17065
LRK55_RS17070: LRK55_RS17070 - TolC family protein, at 3,697,416 to 3,698,849
_RS17070
LRK55_RS17075: LRK55_RS17075 - hypothetical protein, at 3,698,846 to 3,699,913
_RS17075
Group
Condition
LRK55
_RS17055
LRK55
_RS17060
LRK55
_RS17065
LRK55
_RS17070
LRK55
_RS17075
pH
R2A_PIPES pH 4.25
+0.3
-0.6
-1.0
-0.7
-0.0
pH
R2A_PIPES pH 4.5
-0.0
-0.6
-0.4
-0.3
-0.4
pH
R2A_PIPES pH 4.25
+0.1
-0.6
-0.4
-0.5
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.2
-0.5
-0.2
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.7
-0.3
+0.0
-0.2
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
-0.2
-0.3
-0.3
-0.3
no stress control
no stress control
-0.2
-0.5
-0.3
-0.1
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.5
-0.5
+0.0
-0.2
no stress control
no stress control
-0.3
-0.2
-0.3
-0.2
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
-0.5
-0.1
-0.1
-0.1
pH
R2A_PIPES pH 4.5
-0.2
-0.2
-0.4
-0.2
-0.1
stress
R2A with Zinc chloride 2560 uM
-0.3
-0.2
-0.3
-0.1
-0.2
no stress control
no stress control
-0.1
-0.3
-0.5
-0.1
-0.1
no stress control
no stress control
-0.2
-0.1
-0.2
-0.3
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.1
-0.1
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.3
-0.1
-0.0
-0.1
no stress control
no stress control
-0.3
-0.3
-0.1
-0.0
-0.0
no stress control
no stress control
-0.3
-0.2
-0.1
+0.0
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
+0.0
-0.0
-0.1
-0.2
no stress control
no stress control
-0.1
+0.2
-0.1
-0.3
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
-0.0
+0.0
-0.0
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
+0.0
+0.1
+0.0
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.4
-0.1
-0.2
-0.0
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