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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS16910 and LRK55_RS16915 are separated by 82 nucleotides
LRK55_RS16915 and LRK55_RS16920 are separated by 11 nucleotides
LRK55_RS16920 and LRK55_RS16925 overlap by 4 nucleotides
LRK55_RS16925 and LRK55_RS16930 are separated by 3 nucleotides
LRK55_RS16910: LRK55_RS16910 - hypothetical protein, at 3,664,397 to 3,664,810
_RS16910
LRK55_RS16915: LRK55_RS16915 - TolC family protein, at 3,664,893 to 3,666,167
_RS16915
LRK55_RS16920: LRK55_RS16920 - efflux RND transporter periplasmic adaptor subunit, at 3,666,179 to 3,667,471
_RS16920
LRK55_RS16925: LRK55_RS16925 - efflux RND transporter permease subunit, at 3,667,468 to 3,670,644
_RS16925
LRK55_RS16930: LRK55_RS16930 - copper-binding protein, at 3,670,648 to 3,670,998
_RS16930
Group
Condition
LRK55
_RS16910
LRK55
_RS16915
LRK55
_RS16920
LRK55
_RS16925
LRK55
_RS16930
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.3
+0.3
-0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.1
-0.2
-0.2
+0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.1
+0.0
-0.0
-0.4
no stress control
no stress control
-0.4
-0.2
+0.2
+0.1
+0.1
no stress control
no stress control
-0.1
-0.1
+0.1
-0.1
-0.1
pH
R2A_PIPES pH 4.25
-0.2
+0.2
+0.0
-0.4
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.5
-0.1
+0.3
-0.0
+0.1
no stress control
no stress control
+0.1
-0.1
+0.0
-0.1
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.5
+0.5
+0.1
+0.1
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.0
-0.3
+0.1
+0.1
pH
R2A_PIPES pH 4.5
+0.3
-0.1
-0.3
+0.0
-0.1
no stress control
no stress control
+0.3
-0.3
-0.1
-0.0
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.6
+0.0
-0.2
-0.3
-0.0
no stress control
no stress control
+0.2
-0.1
+0.1
+0.0
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.0
+0.4
-0.2
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.1
-0.0
-0.1
+0.1
no stress control
no stress control
+0.3
+0.1
-0.1
+0.0
+0.1
pH
R2A_PIPES pH 4.25
-0.2
-0.0
-0.1
-0.1
+0.8
no stress control
no stress control
+0.2
+0.1
+0.4
-0.0
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.2
+0.2
-0.0
+0.2
pH
R2A_PIPES pH 4.5
+0.3
+0.2
-0.1
+0.0
+0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
+0.1
+0.6
-0.2
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.0
+0.1
+0.1
+0.1
+0.8
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