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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS16895 and LRK55_RS16900 are separated by 182 nucleotides
LRK55_RS16900 and LRK55_RS16905 are separated by 45 nucleotides
LRK55_RS16905 and LRK55_RS16910 are separated by 245 nucleotides
LRK55_RS16910 and LRK55_RS16915 are separated by 82 nucleotides
LRK55_RS16895: LRK55_RS16895 - c-type cytochrome, at 3,660,094 to 3,661,203
_RS16895
LRK55_RS16900: LRK55_RS16900 - DUF411 domain-containing protein, at 3,661,386 to 3,661,757
_RS16900
LRK55_RS16905: LRK55_RS16905 - heavy metal translocating P-type ATPase, at 3,661,803 to 3,664,151
_RS16905
LRK55_RS16910: LRK55_RS16910 - hypothetical protein, at 3,664,397 to 3,664,810
_RS16910
LRK55_RS16915: LRK55_RS16915 - TolC family protein, at 3,664,893 to 3,666,167
_RS16915
Group
Condition
LRK55
_RS16895
LRK55
_RS16900
LRK55
_RS16905
LRK55
_RS16910
LRK55
_RS16915
pH
R2A_PIPES pH 4.25
-0.5
-0.0
-0.3
-0.2
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
+0.6
-0.0
-0.6
-0.3
pH
R2A_PIPES pH 4.25
-0.2
-0.2
-0.3
-0.2
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.1
+0.0
-0.4
-0.1
no stress control
no stress control
+0.3
-0.3
+0.0
-0.4
-0.2
no stress control
no stress control
-0.2
-0.4
+0.2
+0.3
-0.3
stress
R2A with Zinc chloride 2560 uM
-0.7
+0.0
+0.0
+0.0
+0.1
no stress control
no stress control
-0.1
-0.1
-0.0
-0.1
-0.1
no stress control
no stress control
-0.0
-0.4
+0.0
+0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.7
+0.1
+0.3
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.1
-0.0
-0.0
+0.0
pH
R2A_PIPES pH 4.5
-0.3
+0.1
-0.1
+0.3
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.5
+0.7
+0.0
-0.5
+0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
+0.1
+0.1
-0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
+0.0
-0.1
+0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.2
+0.1
+0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.7
+0.0
-0.5
-0.1
no stress control
no stress control
+0.2
+0.2
-0.0
+0.1
-0.1
pH
R2A_PIPES pH 4.5
-0.1
-0.0
+0.0
+0.3
+0.2
no stress control
no stress control
-0.1
+0.2
+0.1
+0.3
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.2
+0.2
+0.1
+0.2
no stress control
no stress control
-0.1
+0.4
+0.1
+0.2
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.4
-0.1
+0.6
+0.0
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