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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS16720 and LRK55_RS16725 overlap by 7 nucleotides
LRK55_RS16725 and LRK55_RS16730 overlap by 4 nucleotides
LRK55_RS16730 and LRK55_RS16735 are separated by 165 nucleotides
LRK55_RS16735 and LRK55_RS16740 are separated by 160 nucleotides
LRK55_RS16720: LRK55_RS16720 - CYTH domain-containing protein, at 3,630,497 to 3,631,018
_RS16720
LRK55_RS16725: LRK55_RS16725 - beta-N-acetylhexosaminidase, at 3,631,012 to 3,632,028
_RS16725
LRK55_RS16730: LRK55_RS16730 - hypoxanthine-guanine phosphoribosyltransferase, at 3,632,025 to 3,632,588
_RS16730
LRK55_RS16735: LRK55_RS16735 - S-methyl-5'-thioinosine phosphorylase, at 3,632,754 to 3,633,515
_RS16735
LRK55_RS16740: LRK55_RS16740 - cold-shock protein, at 3,633,676 to 3,633,879
_RS16740
Group
Condition
LRK55
_RS16720
LRK55
_RS16725
LRK55
_RS16730
LRK55
_RS16735
LRK55
_RS16740
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
N.D.
+0.2
+0.0
N.D.
no stress control
no stress control
+0.1
N.D.
+0.1
-0.0
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
N.D.
-0.4
+0.3
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
N.D.
-0.4
+0.3
N.D.
no stress control
no stress control
-0.2
N.D.
+0.2
+0.2
N.D.
no stress control
no stress control
-0.0
N.D.
+0.3
+0.1
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
N.D.
+0.3
+0.3
N.D.
no stress control
no stress control
+0.1
N.D.
+0.3
+0.1
N.D.
no stress control
no stress control
+0.0
N.D.
+0.2
+0.3
N.D.
no stress control
no stress control
+0.1
N.D.
+0.2
+0.3
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
N.D.
+0.3
+0.0
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
N.D.
+0.5
+0.2
N.D.
no stress control
no stress control
+0.2
N.D.
+0.3
+0.3
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
N.D.
+0.1
+0.3
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.2
N.D.
+0.3
+0.3
N.D.
pH
R2A_PIPES pH 4.5
+0.2
N.D.
+0.5
+0.3
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.3
N.D.
+0.4
+0.3
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
N.D.
+0.3
+0.3
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.4
N.D.
+0.2
+0.4
N.D.
pH
R2A_PIPES pH 4.5
+0.2
N.D.
+0.5
+0.3
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
N.D.
+0.5
+0.6
N.D.
pH
R2A_PIPES pH 4.25
+0.6
N.D.
+0.6
+0.2
N.D.
pH
R2A_PIPES pH 4.25
+0.4
N.D.
+0.6
+0.5
N.D.
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