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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS16615 and LRK55_RS16620 are separated by 162 nucleotides
LRK55_RS16620 and LRK55_RS16625 are separated by 157 nucleotides
LRK55_RS16625 and LRK55_RS16630 overlap by 4 nucleotides
LRK55_RS16630 and LRK55_RS16635 are separated by 37 nucleotides
LRK55_RS16615: LRK55_RS16615 - cation:proton antiporter, at 3,605,897 to 3,607,663
_RS16615
LRK55_RS16620: LRK55_RS16620 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,607,826 to 3,608,575
_RS16620
LRK55_RS16625: LRK55_RS16625 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 3,608,733 to 3,610,076
_RS16625
LRK55_RS16630: LRK55_RS16630 - SlyX family protein, at 3,610,073 to 3,610,297
_RS16630
LRK55_RS16635: LRK55_RS16635 - DUF2058 family protein, at 3,610,335 to 3,610,916
_RS16635
Group
Condition
LRK55
_RS16615
LRK55
_RS16620
LRK55
_RS16625
LRK55
_RS16630
LRK55
_RS16635
stress
R2A with Zinc chloride 2560 uM
-0.1
N.D.
N.D.
N.D.
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
N.D.
N.D.
N.D.
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
N.D.
N.D.
N.D.
-0.3
pH
R2A_PIPES pH 4.25
-0.2
N.D.
N.D.
N.D.
-0.0
no stress control
no stress control
-0.0
N.D.
N.D.
N.D.
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
N.D.
N.D.
N.D.
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.1
N.D.
N.D.
N.D.
-0.1
no stress control
no stress control
+0.0
N.D.
N.D.
N.D.
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
N.D.
N.D.
N.D.
-0.1
no stress control
no stress control
-0.1
N.D.
N.D.
N.D.
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
N.D.
N.D.
N.D.
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
N.D.
N.D.
N.D.
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
N.D.
N.D.
N.D.
+0.0
no stress control
no stress control
+0.0
N.D.
N.D.
N.D.
-0.0
no stress control
no stress control
+0.0
N.D.
N.D.
N.D.
+0.0
no stress control
no stress control
+0.0
N.D.
N.D.
N.D.
+0.1
no stress control
no stress control
+0.0
N.D.
N.D.
N.D.
+0.0
pH
R2A_PIPES pH 4.5
+0.0
N.D.
N.D.
N.D.
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
N.D.
N.D.
N.D.
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
N.D.
N.D.
N.D.
+0.2
pH
R2A_PIPES pH 4.5
+0.0
N.D.
N.D.
N.D.
+0.2
pH
R2A_PIPES pH 4.25
-0.3
N.D.
N.D.
N.D.
+0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
N.D.
N.D.
N.D.
+0.3
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