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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS16355 and LRK55_RS16360 overlap by 4 nucleotides
LRK55_RS16360 and LRK55_RS16365 are separated by 105 nucleotides
LRK55_RS16365 and LRK55_RS16370 are separated by 96 nucleotides
LRK55_RS16370 and LRK55_RS16375 are separated by 140 nucleotides
LRK55_RS16355: LRK55_RS16355 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 3,564,974 to 3,565,447
_RS16355
LRK55_RS16360: LRK55_RS16360 - magnesium transporter, at 3,565,444 to 3,566,838
_RS16360
LRK55_RS16365: LRK55_RS16365 - tRNA pseudouridine(13) synthase TruD, at 3,566,944 to 3,567,954
_RS16365
LRK55_RS16370: LRK55_RS16370 - Smr/MutS family protein, at 3,568,051 to 3,568,596
_RS16370
LRK55_RS16375: LRK55_RS16375 - 5'/3'-nucleotidase SurE, at 3,568,737 to 3,569,534
_RS16375
Group
Condition
LRK55
_RS16355
LRK55
_RS16360
LRK55
_RS16365
LRK55
_RS16370
LRK55
_RS16375
stress
R2A with Zinc chloride 2560 uM
N.D.
-0.2
-0.2
+0.1
-2.3
stress
R2A with Zinc chloride 2560 uM
N.D.
-0.2
-0.6
+0.2
-1.5
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
-0.7
-0.1
+0.8
-1.9
no stress control
no stress control
N.D.
-0.1
-0.2
+0.2
-1.3
pH
R2A_PIPES pH 4.25
N.D.
-0.2
+0.3
-0.9
-0.7
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
-0.1
-0.3
-0.0
-0.8
pH
R2A_PIPES pH 4.25
N.D.
-0.3
-0.2
+0.2
-0.9
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
-0.5
+0.1
+0.2
-0.9
no stress control
no stress control
N.D.
-0.2
-0.3
+0.5
-0.8
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
-0.3
-0.3
-0.0
-0.3
no stress control
no stress control
N.D.
-0.5
+0.4
+0.1
-0.9
pH
R2A_PIPES pH 4.5
N.D.
-0.1
-0.3
+0.1
-0.5
no stress control
no stress control
N.D.
-0.0
-0.5
+0.4
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
-0.0
-0.1
+0.5
-0.9
no stress control
no stress control
N.D.
-0.1
-0.3
+0.4
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
+0.2
+0.3
-0.2
-0.6
pH
R2A_PIPES pH 4.5
N.D.
-0.1
+0.0
-0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
-0.1
-0.0
+0.4
-0.3
no stress control
no stress control
N.D.
+0.1
-0.1
+0.3
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
+0.3
+0.3
-0.2
-0.2
no stress control
no stress control
N.D.
+0.1
+0.2
+0.1
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
+1.0
+0.3
+0.8
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
+1.6
+0.5
+0.4
+0.2
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