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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS16275 and LRK55_RS16280 are separated by 151 nucleotides
LRK55_RS16280 and LRK55_RS16285 are separated by 152 nucleotides
LRK55_RS16285 and LRK55_RS16290 are separated by 46 nucleotides
LRK55_RS16290 and LRK55_RS16295 are separated by 403 nucleotides
LRK55_RS16275: LRK55_RS16275 - VOC family protein, at 3,545,569 to 3,545,997
_RS16275
LRK55_RS16280: LRK55_RS16280 - patatin-like phospholipase family protein, at 3,546,149 to 3,547,033
_RS16280
LRK55_RS16285: LRK55_RS16285 - FAD-binding oxidoreductase, at 3,547,186 to 3,549,018
_RS16285
LRK55_RS16290: LRK55_RS16290 - cbb3-type cytochrome c oxidase subunit I, at 3,549,065 to 3,551,362
_RS16290
LRK55_RS16295: LRK55_RS16295 - iron-containing redox enzyme family protein, at 3,551,766 to 3,552,542
_RS16295
Group
Condition
LRK55
_RS16275
LRK55
_RS16280
LRK55
_RS16285
LRK55
_RS16290
LRK55
_RS16295
stress
R2A with Zinc chloride 2560 uM
-1.9
-0.3
+0.0
+0.2
-0.3
stress
R2A with Zinc chloride 2560 uM
-2.0
-0.1
+0.1
+0.3
-0.4
no stress control
no stress control
-1.0
+0.1
+0.1
+0.3
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.0
+0.0
+0.1
-0.1
pH
R2A_PIPES pH 4.25
-0.4
+0.1
-0.0
+1.0
-0.9
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
+0.2
+0.0
+0.5
-0.2
no stress control
no stress control
-0.3
+0.1
-0.2
+0.4
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.2
+0.1
+0.2
-0.0
no stress control
no stress control
-0.1
+0.2
+0.0
+0.3
-0.3
pH
R2A_PIPES pH 4.5
-0.2
+0.2
+0.3
+0.4
-0.4
pH
R2A_PIPES pH 4.25
-0.2
+0.1
+0.0
+0.9
-0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
-0.3
+0.1
+0.5
-0.4
no stress control
no stress control
+0.1
+0.1
+0.0
+0.3
-0.2
pH
R2A_PIPES pH 4.5
+0.1
+0.2
+0.1
+0.4
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
+0.1
-0.1
+0.5
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.2
+0.2
+0.5
-0.3
no stress control
no stress control
+0.4
+0.2
-0.0
+0.4
-0.2
no stress control
no stress control
+0.7
+0.0
+0.0
+0.3
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.8
-0.2
+0.2
+0.4
-0.2
no stress control
no stress control
+0.8
+0.0
+0.1
+0.4
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.6
+0.2
-0.0
+0.3
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+1.0
+0.4
-0.1
+0.0
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+1.5
+0.2
+0.0
+0.2
-0.2
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