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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS16165 and LRK55_RS16170 are separated by 60 nucleotides
LRK55_RS16170 and LRK55_RS16175 are separated by 144 nucleotides
LRK55_RS16175 and LRK55_RS16180 are separated by 77 nucleotides
LRK55_RS16180 and LRK55_RS16185 are separated by 44 nucleotides
LRK55_RS16165: LRK55_RS16165 - metallophosphoesterase family protein, at 3,526,647 to 3,527,408
_RS16165
LRK55_RS16170: LRK55_RS16170 - GFA family protein, at 3,527,469 to 3,527,933
_RS16170
LRK55_RS16175: LRK55_RS16175 - hypothetical protein, at 3,528,078 to 3,528,593
_RS16175
LRK55_RS16180: LRK55_RS16180 - DUF1579 domain-containing protein, at 3,528,671 to 3,529,258
_RS16180
LRK55_RS16185: LRK55_RS16185 - helix-turn-helix domain-containing protein, at 3,529,303 to 3,529,725
_RS16185
Group
Condition
LRK55
_RS16165
LRK55
_RS16170
LRK55
_RS16175
LRK55
_RS16180
LRK55
_RS16185
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.0
-0.4
+0.2
+0.1
no stress control
no stress control
+0.2
+0.2
-0.0
+0.2
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.2
-0.0
+0.1
+0.0
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.4
-0.2
-0.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.4
-0.1
+0.3
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.3
+0.0
-0.4
+0.5
no stress control
no stress control
+0.2
+0.1
+0.2
-0.1
+0.1
no stress control
no stress control
+0.1
+0.1
+0.1
+0.0
+0.2
no stress control
no stress control
+0.1
+0.3
+0.2
+0.1
+0.0
pH
R2A_PIPES pH 4.25
+0.1
+0.4
+0.3
-0.3
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.3
+0.2
+0.0
+0.0
no stress control
no stress control
+0.1
+0.2
+0.2
+0.4
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.4
-0.1
+0.1
+0.2
no stress control
no stress control
+0.1
+0.4
+0.1
-0.0
+0.1
no stress control
no stress control
+0.1
+0.2
+0.1
-0.1
+0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.2
-0.1
+0.2
+0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.5
-0.4
+0.3
+0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.3
+0.4
-0.1
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.3
+0.3
-0.1
+0.5
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.7
+0.1
-0.1
+0.6
pH
R2A_PIPES pH 4.5
+0.2
+0.4
+0.2
+0.3
+0.4
pH
R2A_PIPES pH 4.5
+0.2
+0.1
+0.4
+0.5
+0.4
pH
R2A_PIPES pH 4.25
+0.2
+0.3
+0.3
+0.3
+0.6
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