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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15855 and LRK55_RS15860 are separated by 114 nucleotides
LRK55_RS15860 and LRK55_RS15865 are separated by 76 nucleotides
LRK55_RS15865 and LRK55_RS15870 are separated by 11 nucleotides
LRK55_RS15870 and LRK55_RS15875 overlap by 14 nucleotides
LRK55_RS15855: LRK55_RS15855 - acetoacetyl-CoA reductase, at 3,464,395 to 3,465,156
_RS15855
LRK55_RS15860: LRK55_RS15860 - polyhydroxyalkanoate synthesis repressor PhaR, at 3,465,271 to 3,465,768
_RS15860
LRK55_RS15865: LRK55_RS15865 - DHA2 family efflux MFS transporter permease subunit, at 3,465,845 to 3,467,407
_RS15865
LRK55_RS15870: LRK55_RS15870 - efflux RND transporter periplasmic adaptor subunit, at 3,467,419 to 3,468,627
_RS15870
LRK55_RS15875: LRK55_RS15875 - efflux transporter outer membrane subunit, at 3,468,614 to 3,470,092
_RS15875
Group
Condition
LRK55
_RS15855
LRK55
_RS15860
LRK55
_RS15865
LRK55
_RS15870
LRK55
_RS15875
pH
R2A_PIPES pH 4.25
+0.3
-3.6
-0.1
-0.5
-0.4
pH
R2A_PIPES pH 4.25
+0.6
-3.2
-0.2
-0.2
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-2.8
+0.1
-0.1
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-2.5
-0.3
-0.3
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.0
-2.6
+0.0
-0.0
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.0
-2.4
-0.1
+0.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-1.5
-0.3
-0.0
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-1.4
-0.0
-0.2
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-1.5
-0.3
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-1.4
-0.1
-0.4
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
-1.6
-0.0
-0.2
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-1.3
-0.3
+0.2
-0.1
pH
R2A_PIPES pH 4.5
+0.2
-1.4
-0.1
-0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-1.4
-0.0
-0.0
-0.1
no stress control
no stress control
-0.0
-1.2
-0.0
-0.1
-0.0
no stress control
no stress control
+0.2
-1.3
+0.0
-0.2
-0.1
no stress control
no stress control
-0.3
-1.2
+0.0
+0.0
+0.0
no stress control
no stress control
+0.1
-1.0
-0.0
-0.2
-0.1
pH
R2A_PIPES pH 4.5
+0.3
-1.4
-0.1
+0.0
-0.1
no stress control
no stress control
+0.2
-1.3
-0.0
-0.1
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-1.3
+0.1
+0.0
+0.2
no stress control
no stress control
+0.1
-1.1
+0.1
+0.0
-0.1
no stress control
no stress control
+0.3
-0.6
+0.0
-0.1
+0.1
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