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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15730 and LRK55_RS15735 overlap by 8 nucleotides
LRK55_RS15735 and LRK55_RS15740 are separated by 3 nucleotides
LRK55_RS15740 and LRK55_RS15745 are separated by 10 nucleotides
LRK55_RS15745 and LRK55_RS15750 are separated by 139 nucleotides
LRK55_RS15730: LRK55_RS15730 - SDR family oxidoreductase, at 3,441,766 to 3,442,527
_RS15730
LRK55_RS15735: LRK55_RS15735 - class I SAM-dependent methyltransferase, at 3,442,520 to 3,443,299
_RS15735
LRK55_RS15740: LRK55_RS15740 - quinone-dependent dihydroorotate dehydrogenase, at 3,443,303 to 3,444,340
_RS15740
LRK55_RS15745: LRK55_RS15745 - UDP-N-acetylmuramate dehydrogenase, at 3,444,351 to 3,445,379
_RS15745
LRK55_RS15750: LRK55_RS15750 - MFS transporter, at 3,445,519 to 3,446,649
_RS15750
Group
Condition
LRK55
_RS15730
LRK55
_RS15735
LRK55
_RS15740
LRK55
_RS15745
LRK55
_RS15750
no stress control
no stress control
-0.3
-0.2
N.D.
N.D.
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.4
+0.2
N.D.
N.D.
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.0
N.D.
N.D.
+0.0
no stress control
no stress control
+0.0
-0.1
N.D.
N.D.
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.1
N.D.
N.D.
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.1
N.D.
N.D.
+0.0
no stress control
no stress control
-0.3
+0.2
N.D.
N.D.
+0.2
no stress control
no stress control
-0.1
+0.0
N.D.
N.D.
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.1
N.D.
N.D.
+0.3
pH
R2A_PIPES pH 4.5
-0.0
+0.2
N.D.
N.D.
-0.0
no stress control
no stress control
-0.0
+0.1
N.D.
N.D.
+0.0
pH
R2A_PIPES pH 4.5
-0.2
+0.3
N.D.
N.D.
+0.2
no stress control
no stress control
-0.0
+0.1
N.D.
N.D.
+0.1
pH
R2A_PIPES pH 4.25
+0.2
+0.0
N.D.
N.D.
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.4
N.D.
N.D.
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.1
N.D.
N.D.
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.3
N.D.
N.D.
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.4
N.D.
N.D.
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.3
N.D.
N.D.
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.4
N.D.
N.D.
+0.2
no stress control
no stress control
-0.1
+0.5
N.D.
N.D.
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
+0.2
N.D.
N.D.
+0.2
pH
R2A_PIPES pH 4.25
+0.3
+0.3
N.D.
N.D.
+0.3
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