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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15630 and LRK55_RS15635 are separated by 24 nucleotides
LRK55_RS15635 and LRK55_RS15640 are separated by 309 nucleotides
LRK55_RS15640 and LRK55_RS15645 are separated by 103 nucleotides
LRK55_RS15645 and LRK55_RS15650 are separated by 84 nucleotides
LRK55_RS15630: LRK55_RS15630 - ion channel, at 3,423,472 to 3,424,185
_RS15630
LRK55_RS15635: LRK55_RS15635 - HDOD domain-containing protein, at 3,424,210 to 3,425,229
_RS15635
LRK55_RS15640: LRK55_RS15640 - rRNA pseudouridine synthase, at 3,425,539 to 3,426,261
_RS15640
LRK55_RS15645: LRK55_RS15645 - LLM class flavin-dependent oxidoreductase, at 3,426,365 to 3,427,363
_RS15645
LRK55_RS15650: LRK55_RS15650 - PA4780 family RIO1-like protein kinase, at 3,427,448 to 3,428,305
_RS15650
Group
Condition
LRK55
_RS15630
LRK55
_RS15635
LRK55
_RS15640
LRK55
_RS15645
LRK55
_RS15650
no stress control
no stress control
+0.1
+0.1
-0.0
-0.6
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
+0.1
+0.0
-0.4
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.0
-0.4
+0.1
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.0
-0.1
-0.1
-0.2
no stress control
no stress control
-0.0
-0.1
-0.0
-0.0
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.1
-0.4
-0.0
-0.2
no stress control
no stress control
+0.1
-0.0
-0.1
+0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.1
+0.0
-0.0
+0.1
no stress control
no stress control
-0.0
+0.1
-0.0
-0.0
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.1
-0.1
+0.3
-0.2
no stress control
no stress control
+0.2
+0.0
-0.1
+0.1
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.3
+0.1
+0.0
-0.2
no stress control
no stress control
+0.2
+0.3
+0.1
-0.1
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.2
-0.3
+0.3
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.2
+0.3
-0.1
+0.3
pH
R2A_PIPES pH 4.5
+0.2
+0.2
-0.0
-0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.3
-0.1
+0.0
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.3
+0.3
-0.1
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.1
+0.1
+0.2
+0.1
pH
R2A_PIPES pH 4.5
+0.2
+0.2
+0.1
+0.0
+0.3
no stress control
no stress control
+0.2
+0.1
+0.4
+0.0
+0.2
pH
R2A_PIPES pH 4.25
+0.0
+0.1
-0.1
+0.5
+0.4
pH
R2A_PIPES pH 4.25
-0.1
+0.3
+0.4
+0.1
+0.3
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LRK55_RS15640
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