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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15530 and LRK55_RS15535 are separated by 111 nucleotides
LRK55_RS15535 and LRK55_RS15540 overlap by 10 nucleotides
LRK55_RS15540 and LRK55_RS15545 are separated by 106 nucleotides
LRK55_RS15545 and LRK55_RS15550 are separated by 37 nucleotides
LRK55_RS15530: LRK55_RS15530 - HD domain-containing phosphohydrolase, at 3,399,721 to 3,400,833
_RS15530
LRK55_RS15535: LRK55_RS15535 - 2'-5' RNA ligase family protein, at 3,400,945 to 3,401,577
_RS15535
LRK55_RS15540: LRK55_RS15540 - cupin domain-containing protein, at 3,401,568 to 3,402,023
_RS15540
LRK55_RS15545: LRK55_RS15545 - nodulation protein NfeD, at 3,402,130 to 3,403,509
_RS15545
LRK55_RS15550: LRK55_RS15550 - slipin family protein, at 3,403,547 to 3,404,323
_RS15550
Group
Condition
LRK55
_RS15530
LRK55
_RS15535
LRK55
_RS15540
LRK55
_RS15545
LRK55
_RS15550
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.4
-0.3
-0.1
-2.5
pH
R2A_PIPES pH 4.25
-0.1
-0.8
-0.3
-0.1
-1.6
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.4
-0.3
-0.1
-1.8
no stress control
no stress control
+0.1
-0.3
+0.0
-0.1
-1.7
no stress control
no stress control
+0.1
-0.1
-0.2
+0.0
-1.4
pH
R2A_PIPES pH 4.25
+0.0
+0.5
-0.1
+0.0
-1.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.3
+0.2
+0.0
-1.2
no stress control
no stress control
+0.0
-0.1
+0.1
+0.1
-1.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.5
+0.1
+0.0
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-0.1
+0.0
-0.2
-0.5
pH
R2A_PIPES pH 4.5
-0.2
-0.4
+0.1
-0.1
+0.0
pH
R2A_PIPES pH 4.5
+0.0
-0.4
+0.4
+0.0
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-0.5
+0.3
+0.0
-0.2
no stress control
no stress control
+0.0
+0.5
+0.2
+0.0
-1.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.2
+0.1
+0.0
-0.1
no stress control
no stress control
-0.1
+0.4
+0.3
+0.0
-0.8
no stress control
no stress control
+0.0
-0.4
+0.3
+0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.4
-0.1
-0.0
-0.0
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.3
+0.1
+0.0
+0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.4
-0.6
+0.4
+0.1
+0.2
no stress control
no stress control
-0.1
+0.3
+0.2
+0.0
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.2
-0.2
-0.0
+0.7
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.3
+0.0
+0.1
+0.1
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