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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15420 and LRK55_RS15425 overlap by 4 nucleotides
LRK55_RS15425 and LRK55_RS15430 overlap by 20 nucleotides
LRK55_RS15430 and LRK55_RS15435 are separated by 23 nucleotides
LRK55_RS15435 and LRK55_RS15440 are separated by 192 nucleotides
LRK55_RS15420: LRK55_RS15420 - cbb3-type cytochrome c oxidase subunit I, at 3,379,880 to 3,381,367
_RS15420
LRK55_RS15425: LRK55_RS15425 - cytochrome oxidase, at 3,381,364 to 3,382,089
_RS15425
LRK55_RS15430: LRK55_RS15430 - OsmC family protein, at 3,382,070 to 3,382,486
_RS15430
LRK55_RS15435: LRK55_RS15435 - acyl-CoA dehydrogenase family protein, at 3,382,510 to 3,384,279
_RS15435
LRK55_RS15440: LRK55_RS15440 - DksA/TraR family C4-type zinc finger protein, at 3,384,472 to 3,384,738
_RS15440
Group
Condition
LRK55
_RS15420
LRK55
_RS15425
LRK55
_RS15430
LRK55
_RS15435
LRK55
_RS15440
no stress control
no stress control
-0.1
-0.2
+0.0
-0.4
-0.4
no stress control
no stress control
-0.2
-0.2
-0.6
-0.1
+0.0
no stress control
no stress control
-0.3
-0.2
-0.5
-0.1
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.3
-0.3
-0.4
+0.1
pH
R2A_PIPES pH 4.5
-0.1
-0.1
-0.2
-0.0
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.1
-0.6
-0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.2
-0.1
-0.3
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.1
+0.1
-0.2
-0.2
no stress control
no stress control
-0.1
-0.2
-0.1
-0.1
+0.1
pH
R2A_PIPES pH 4.5
-0.1
-0.1
-0.1
-0.2
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.1
+0.4
-0.3
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.0
-0.0
-0.2
+0.0
pH
R2A_PIPES pH 4.25
-0.3
-0.3
+0.2
-0.0
+0.2
no stress control
no stress control
-0.1
-0.2
+0.1
-0.2
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.0
+0.2
-0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.0
-0.1
-0.2
+0.2
no stress control
no stress control
+0.1
+0.1
-0.2
-0.2
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.0
+0.1
-0.0
-0.0
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.1
+0.4
-0.2
+0.1
pH
R2A_PIPES pH 4.25
-0.1
+0.0
+0.2
-0.3
+0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.0
+0.5
+0.0
-0.0
no stress control
no stress control
+0.0
+0.1
+0.5
-0.0
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
+0.4
+0.0
+0.1
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