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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15290 and LRK55_RS15295 are separated by 25 nucleotides
LRK55_RS15295 and LRK55_RS15300 are separated by 191 nucleotides
LRK55_RS15300 and LRK55_RS15305 are separated by 141 nucleotides
LRK55_RS15305 and LRK55_RS15310 are separated by 325 nucleotides
LRK55_RS15290: LRK55_RS15290 - MFS transporter, at 3,355,896 to 3,357,140
_RS15290
LRK55_RS15295: LRK55_RS15295 - DUF3224 domain-containing protein, at 3,357,166 to 3,357,573
_RS15295
LRK55_RS15300: LRK55_RS15300 - helix-turn-helix transcriptional regulator, at 3,357,765 to 3,358,571
_RS15300
LRK55_RS15305: LRK55_RS15305 - GGDEF domain-containing protein, at 3,358,713 to 3,359,867
_RS15305
LRK55_RS15310: LRK55_RS15310 - hypothetical protein, at 3,360,193 to 3,360,519
_RS15310
Group
Condition
LRK55
_RS15290
LRK55
_RS15295
LRK55
_RS15300
LRK55
_RS15305
LRK55
_RS15310
pH
R2A_PIPES pH 4.25
+0.6
-1.6
-0.3
-0.5
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-0.2
-0.1
-0.7
-0.7
pH
R2A_PIPES pH 4.5
-0.0
-0.5
-0.1
-0.5
-0.6
no stress control
no stress control
+0.3
-0.4
+0.1
-0.8
-0.6
stress
R2A with Zinc chloride 2560 uM
+0.0
-0.7
-0.3
-0.5
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.0
-0.9
+0.1
+0.1
-0.5
pH
R2A_PIPES pH 4.5
+0.2
-0.4
-0.3
-0.2
-0.4
pH
R2A_PIPES pH 4.25
+0.5
-0.1
+0.2
-1.3
-0.4
no stress control
no stress control
-0.0
-0.0
-0.0
-0.4
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.5
-0.1
-0.3
-0.6
no stress control
no stress control
+0.1
-0.4
-0.3
-0.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.0
-0.1
-0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.2
-0.0
-0.2
-0.1
no stress control
no stress control
-0.0
+0.2
-0.2
-0.1
-0.2
no stress control
no stress control
+0.1
+0.1
-0.1
-0.1
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.2
+0.0
-0.4
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.1
+0.1
-0.4
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.1
-0.2
-0.1
-0.0
no stress control
no stress control
+0.2
+0.2
-0.1
-0.5
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.2
+0.3
-0.2
-0.2
no stress control
no stress control
-0.1
+0.0
+0.2
-0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.1
+0.0
-0.3
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
+0.3
-0.0
-0.2
+0.0
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