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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15175 and LRK55_RS15180 overlap by 11 nucleotides
LRK55_RS15180 and LRK55_RS15185 overlap by 4 nucleotides
LRK55_RS15185 and LRK55_RS15190 are separated by 637 nucleotides
LRK55_RS15190 and LRK55_RS15195 are separated by 238 nucleotides
LRK55_RS15175: LRK55_RS15175 - DinB family protein, at 3,334,011 to 3,334,493
_RS15175
LRK55_RS15180: LRK55_RS15180 - protoporphyrinogen oxidase, at 3,334,483 to 3,335,934
_RS15180
LRK55_RS15185: LRK55_RS15185 - ferrochelatase, at 3,335,931 to 3,336,881
_RS15185
LRK55_RS15190: LRK55_RS15190 - hypothetical protein, at 3,337,519 to 3,337,824
_RS15190
LRK55_RS15195: LRK55_RS15195 - hypothetical protein, at 3,338,063 to 3,339,922
_RS15195
Group
Condition
LRK55
_RS15175
LRK55
_RS15180
LRK55
_RS15185
LRK55
_RS15190
LRK55
_RS15195
pH
R2A_PIPES pH 4.5
-0.8
+0.0
-0.0
-0.4
-0.0
stress
R2A with Zinc chloride 2560 uM
-0.5
-0.1
+0.0
-0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
+0.1
+0.1
-0.6
-0.0
stress
R2A with Zinc chloride 2560 uM
-0.4
-0.1
-0.0
+0.1
-0.0
no stress control
no stress control
-0.7
+0.1
-0.1
+0.0
+0.1
no stress control
no stress control
-0.5
-0.1
+0.1
-0.0
+0.2
no stress control
no stress control
-0.5
+0.1
-0.0
+0.1
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.7
+0.0
+0.1
+0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.3
+0.0
-0.2
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
+0.1
-0.1
+0.1
-0.0
no stress control
no stress control
-0.1
+0.2
+0.0
-0.3
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
-0.2
+0.2
-0.0
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
+0.0
+0.0
+0.1
+0.1
pH
R2A_PIPES pH 4.5
-0.1
+0.1
-0.1
+0.1
+0.1
no stress control
no stress control
+0.0
+0.0
-0.1
+0.2
+0.0
no stress control
no stress control
+0.2
-0.1
-0.1
+0.0
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
+0.1
+0.0
+0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.6
-0.0
+0.1
-0.5
+0.0
no stress control
no stress control
+0.2
+0.1
-0.1
-0.0
+0.0
pH
R2A_PIPES pH 4.25
+0.6
-0.3
+0.1
+0.1
-0.1
pH
R2A_PIPES pH 4.25
+0.2
+0.5
-0.1
-0.2
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.1
+0.1
+0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.4
+0.1
+0.1
+0.2
-0.0
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