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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15155 and LRK55_RS15160 are separated by 593 nucleotides
LRK55_RS15160 and LRK55_RS15165 are separated by 454 nucleotides
LRK55_RS15165 and LRK55_RS15170 are separated by 149 nucleotides
LRK55_RS15170 and LRK55_RS15175 are separated by 32 nucleotides
LRK55_RS15155: LRK55_RS15155 - LysR substrate-binding domain-containing protein, at 3,328,709 to 3,329,641
_RS15155
LRK55_RS15160: LRK55_RS15160 - tetratricopeptide repeat protein, at 3,330,235 to 3,331,902
_RS15160
LRK55_RS15165: LRK55_RS15165 - hypothetical protein, at 3,332,357 to 3,333,160
_RS15165
LRK55_RS15170: LRK55_RS15170 - chlorite dismutase family protein, at 3,333,310 to 3,333,978
_RS15170
LRK55_RS15175: LRK55_RS15175 - DinB family protein, at 3,334,011 to 3,334,493
_RS15175
Group
Condition
LRK55
_RS15155
LRK55
_RS15160
LRK55
_RS15165
LRK55
_RS15170
LRK55
_RS15175
no stress control
no stress control
-0.2
-0.0
-0.1
-0.3
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.0
+0.0
-0.0
-0.7
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.1
-0.6
-0.4
-0.0
no stress control
no stress control
-0.3
-0.0
-0.1
-0.0
-0.5
pH
R2A_PIPES pH 4.5
-0.1
-0.1
+0.1
-0.0
-0.8
stress
R2A with Zinc chloride 2560 uM
+0.0
+0.1
-0.0
-0.3
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
-0.0
-0.1
-0.1
-0.2
no stress control
no stress control
+0.1
+0.1
+0.2
-0.2
-0.7
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
-0.1
-0.1
-0.3
-0.3
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.0
+0.1
-0.1
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.1
-0.2
-0.2
-0.0
no stress control
no stress control
+0.1
+0.0
-0.2
-0.2
+0.2
no stress control
no stress control
+0.4
+0.0
-0.0
-0.2
-0.1
no stress control
no stress control
+0.3
+0.0
-0.0
-0.3
+0.0
no stress control
no stress control
-0.0
-0.1
-0.0
-0.1
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.0
+0.1
+0.0
-0.3
pH
R2A_PIPES pH 4.25
-0.1
+0.0
-0.0
-0.1
+0.2
pH
R2A_PIPES pH 4.5
+0.2
+0.1
+0.1
-0.2
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.0
-0.0
+0.0
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.1
+0.1
-0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.4
-0.1
-0.2
-0.1
+0.4
pH
R2A_PIPES pH 4.25
+0.2
-0.0
+0.4
-0.5
+0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.0
+0.1
-0.2
+0.6
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