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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15115 and LRK55_RS15120 are separated by 859 nucleotides
LRK55_RS15120 and LRK55_RS15125 overlap by 4 nucleotides
LRK55_RS15125 and LRK55_RS15130 overlap by 4 nucleotides
LRK55_RS15130 and LRK55_RS15135 are separated by 18 nucleotides
LRK55_RS15115: LRK55_RS15115 - transposase, at 3,319,010 to 3,319,717
_RS15115
LRK55_RS15120: LRK55_RS15120 - FAD-binding oxidoreductase, at 3,320,577 to 3,322,136
_RS15120
LRK55_RS15125: LRK55_RS15125 - glycerol-3-phosphate dehydrogenase/oxidase, at 3,322,133 to 3,323,755
_RS15125
LRK55_RS15130: LRK55_RS15130 - FGGY-family carbohydrate kinase, at 3,323,752 to 3,325,311
_RS15130
LRK55_RS15135: LRK55_RS15135 - helix-turn-helix domain-containing protein, at 3,325,330 to 3,326,505
_RS15135
Group
Condition
LRK55
_RS15115
LRK55
_RS15120
LRK55
_RS15125
LRK55
_RS15130
LRK55
_RS15135
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
+0.0
+0.1
-0.2
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.2
-0.4
+0.0
-0.2
pH
R2A_PIPES pH 4.5
-0.4
-0.1
+0.1
+0.1
-0.2
pH
R2A_PIPES pH 4.25
-0.0
-0.2
+0.0
+0.1
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.0
-0.1
-0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
-0.1
+0.2
+0.0
-0.2
pH
R2A_PIPES pH 4.25
-0.3
-0.3
+0.6
-0.0
-0.2
no stress control
no stress control
-0.1
+0.0
+0.0
-0.1
-0.1
no stress control
no stress control
-0.2
-0.0
+0.1
+0.0
-0.1
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.0
-0.0
+0.2
-0.1
no stress control
no stress control
-0.3
-0.0
+0.3
+0.0
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.0
+0.0
+0.1
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.2
+0.4
-0.0
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.0
+0.2
-0.1
-0.1
no stress control
no stress control
+0.1
-0.1
+0.3
-0.1
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.0
+0.2
+0.0
-0.0
no stress control
no stress control
+0.0
+0.1
+0.2
-0.0
-0.0
pH
R2A_PIPES pH 4.5
+0.1
-0.0
+0.1
+0.2
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.0
+0.3
+0.0
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
-0.1
+0.4
+0.1
-0.0
no stress control
no stress control
-0.1
+0.1
+0.6
-0.0
-0.1
no stress control
no stress control
-0.0
+0.1
+0.5
+0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
+0.1
+0.3
+0.0
-0.1
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