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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS15105 and LRK55_RS15110 are separated by 64 nucleotides
LRK55_RS15110 and LRK55_RS15115 are separated by 269 nucleotides
LRK55_RS15115 and LRK55_RS15120 are separated by 859 nucleotides
LRK55_RS15120 and LRK55_RS15125 overlap by 4 nucleotides
LRK55_RS15105: LRK55_RS15105 - MmgE/PrpD family protein, at 3,317,489 to 3,317,659
_RS15105
LRK55_RS15110: LRK55_RS15110 - MmgE/PrpD family protein, at 3,317,724 to 3,318,740
_RS15110
LRK55_RS15115: LRK55_RS15115 - transposase, at 3,319,010 to 3,319,717
_RS15115
LRK55_RS15120: LRK55_RS15120 - FAD-binding oxidoreductase, at 3,320,577 to 3,322,136
_RS15120
LRK55_RS15125: LRK55_RS15125 - glycerol-3-phosphate dehydrogenase/oxidase, at 3,322,133 to 3,323,755
_RS15125
Group
Condition
LRK55
_RS15105
LRK55
_RS15110
LRK55
_RS15115
LRK55
_RS15120
LRK55
_RS15125
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.3
+0.0
-0.5
+0.0
+0.1
pH
R2A_PIPES pH 4.25
-1.1
-0.0
-0.0
-0.2
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-1.0
-0.2
-0.1
-0.2
+0.4
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.3
+0.1
-0.2
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.7
-0.1
+0.1
-0.0
-0.1
pH
R2A_PIPES pH 4.5
-0.7
-0.2
+0.1
-0.0
+0.1
pH
R2A_PIPES pH 4.5
+0.3
-0.4
-0.4
-0.1
+0.1
no stress control
no stress control
-0.2
-0.3
-0.3
-0.0
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.2
-0.3
-0.1
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.1
+0.0
+0.3
+0.1
+0.3
no stress control
no stress control
+0.0
-0.1
-0.1
+0.0
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
+0.0
+0.1
+0.0
+0.0
no stress control
no stress control
-0.4
-0.0
+0.0
+0.1
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.4
+0.2
+0.1
-0.0
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.2
-0.0
-0.1
-0.0
-0.0
no stress control
no stress control
+0.4
-0.2
-0.2
-0.0
+0.1
no stress control
no stress control
+0.2
-0.4
+0.1
-0.1
+0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.0
-0.1
-0.0
+0.2
pH
R2A_PIPES pH 4.25
+0.3
-0.2
-0.3
-0.3
+0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.2
+0.2
-0.0
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.3
+0.0
-0.1
+0.4
no stress control
no stress control
-0.4
+0.1
-0.0
+0.1
+0.5
no stress control
no stress control
-0.0
-0.2
-0.1
+0.1
+0.6
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