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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS14895 and LRK55_RS14900 are separated by 109 nucleotides
LRK55_RS14900 and LRK55_RS14905 are separated by 18 nucleotides
LRK55_RS14905 and LRK55_RS14910 are separated by 189 nucleotides
LRK55_RS14910 and LRK55_RS14915 overlap by 4 nucleotides
LRK55_RS14895: LRK55_RS14895 - sulfurtransferase, at 3,274,200 to 3,275,048
_RS14895
LRK55_RS14900: LRK55_RS14900 - enoyl-CoA hydratase/isomerase family protein, at 3,275,158 to 3,275,916
_RS14900
LRK55_RS14905: LRK55_RS14905 - DUF4139 domain-containing protein, at 3,275,935 to 3,277,389
_RS14905
LRK55_RS14910: LRK55_RS14910 - GNAT family N-acetyltransferase, at 3,277,579 to 3,278,079
_RS14910
LRK55_RS14915: LRK55_RS14915 - AraC family transcriptional regulator, at 3,278,076 to 3,278,714
_RS14915
Group
Condition
LRK55
_RS14895
LRK55
_RS14900
LRK55
_RS14905
LRK55
_RS14910
LRK55
_RS14915
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.2
-0.1
+0.1
-1.0
no stress control
no stress control
+0.0
-0.6
-0.1
+0.1
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
+0.1
-0.1
-0.2
-0.5
no stress control
no stress control
-0.0
-0.4
-0.1
-0.2
+0.2
no stress control
no stress control
-0.1
-0.1
-0.0
-0.0
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.3
-0.1
-0.1
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.2
-0.1
-0.1
-0.0
no stress control
no stress control
-0.0
+0.0
-0.0
-0.1
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.2
+0.1
+0.0
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.2
+0.2
-0.2
-0.3
pH
R2A_PIPES pH 4.5
+0.0
-0.0
+0.0
-0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.4
-0.0
+0.0
+0.2
no stress control
no stress control
+0.0
+0.1
-0.0
+0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.2
+0.1
+0.1
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.2
+0.1
-0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
+0.0
-0.0
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.2
+0.1
-0.0
+0.2
no stress control
no stress control
+0.1
+0.1
+0.2
-0.1
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.2
-0.0
+0.0
+0.3
pH
R2A_PIPES pH 4.25
+0.4
+0.7
+0.0
-0.2
-0.3
pH
R2A_PIPES pH 4.5
+0.2
+0.5
-0.0
-0.0
+0.2
pH
R2A_PIPES pH 4.25
+0.3
+0.4
+0.3
+0.4
-0.2
no stress control
no stress control
+0.2
+0.3
+0.2
+0.0
+0.5
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