Fitness for 5 genes in Rhodanobacter denitrificans MT42

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Top 23 experiments (either direction), sorted by average fitness

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500 ntLRK55_RS14820 and LRK55_RS14825 overlap by 4 nucleotidesLRK55_RS14825 and LRK55_RS14830 are separated by 55 nucleotidesLRK55_RS14830 and LRK55_RS14835 are separated by 18 nucleotidesLRK55_RS14835 and LRK55_RS14840 are separated by 100 nucleotides LRK55_RS14820: LRK55_RS14820 - polynucleotide adenylyltransferase PcnB, at 3,259,319 to 3,260,671 _RS14820 LRK55_RS14825: LRK55_RS14825 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 3,260,668 to 3,261,147 _RS14825 LRK55_RS14830: LRK55_RS14830 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,261,203 to 3,262,033 _RS14830 LRK55_RS14835: LRK55_RS14835 - pantoate--beta-alanine ligase, at 3,262,052 to 3,262,897 _RS14835 LRK55_RS14840: LRK55_RS14840 - aspartate 1-decarboxylase, at 3,262,998 to 3,263,390 _RS14840
Group Condition LRK55_RS14820 LRK55_RS14825 LRK55_RS14830 LRK55_RS14835 LRK55_RS14840
stress R2A with Nickel (II) chloride 1696 uM -1.3 N.D. -2.0 -2.5 -1.5
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -4.7 N.D. -0.3 -0.6 -0.7
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -4.8 N.D. -0.5 -0.2 -0.5
stress R2A with Zinc chloride 2560 uM -0.7 N.D. -1.6 -1.8 -1.8
no stress control no stress control -0.8 N.D. -1.9 -1.6 -1.4
stress R2A with Nickel (II) chloride 1696 uM -1.5 N.D. -1.1 -1.5 -1.5
no stress control no stress control -1.4 N.D. -1.9 -1.3 -1.1
stress R2A with Zinc chloride 2560 uM -1.0 N.D. -1.7 -0.9 -1.8
no stress control no stress control -1.4 N.D. -0.3 -1.4 -1.0
no stress control no stress control -1.2 N.D. -0.7 -0.8 -1.2
no stress control no stress control -1.0 N.D. -0.9 -0.9 -0.9
no stress control no stress control -1.1 N.D. -1.1 -0.8 -0.8
stress R2A_PIPES with Cadmium chloride 64 uM -1.7 N.D. -0.8 -1.1 -0.0
stress R2A_PIPES with Aluminum chloride 0.140625 mM -0.9 N.D. -0.6 -1.0 -0.6
stress R2A_PIPES with Aluminum chloride 0.140625 mM -0.6 N.D. -0.4 -0.6 -0.9
no stress control no stress control -0.7 N.D. -1.2 -0.3 -0.3
stress R2A_PIPES with Cadmium chloride 64 uM -1.2 N.D. +0.5 -0.4 -0.1
pH R2A_PIPES pH 4.5 -2.1 N.D. +0.8 +0.4 -0.2
stress R2A with Metal_ion_mix_sitestressplate 2 x -2.0 N.D. +0.5 +0.0 +0.7
stress R2A with Metal_ion_mix_sitestressplate 2 x -2.0 N.D. +0.5 +0.1 +0.8
pH R2A_PIPES pH 4.5 -1.9 N.D. +0.9 +0.8 +0.2
pH R2A_PIPES pH 4.25 -0.5 N.D. +3.1 +2.8 +2.1
pH R2A_PIPES pH 4.25 -0.5 N.D. +3.9 +2.9 +1.4
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