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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS14520 and LRK55_RS14525 are separated by 96 nucleotides
LRK55_RS14525 and LRK55_RS14530 are separated by 112 nucleotides
LRK55_RS14530 and LRK55_RS14535 are separated by 110 nucleotides
LRK55_RS14535 and LRK55_RS14540 are separated by 107 nucleotides
LRK55_RS14520: LRK55_RS14520 - tRNA threonylcarbamoyladenosine dehydratase, at 3,195,504 to 3,196,292
_RS14520
LRK55_RS14525: LRK55_RS14525 - sel1 repeat family protein, at 3,196,389 to 3,197,312
_RS14525
LRK55_RS14530: LRK55_RS14530 - beta-ketoacyl-ACP reductase, at 3,197,425 to 3,198,165
_RS14530
LRK55_RS14535: LRK55_RS14535 - tRNA glutamyl-Q(34) synthetase GluQRS, at 3,198,276 to 3,199,142
_RS14535
LRK55_RS14540: LRK55_RS14540 - protease HtpX, at 3,199,250 to 3,200,143
_RS14540
Group
Condition
LRK55
_RS14520
LRK55
_RS14525
LRK55
_RS14530
LRK55
_RS14535
LRK55
_RS14540
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.1
-0.6
-0.1
-4.8
stress
R2A with Nickel (II) chloride 1696 uM
-0.8
+0.1
-0.6
-0.2
-4.2
stress
R2A with Zinc chloride 2560 uM
-0.2
+0.2
-0.6
-0.2
-4.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.8
-0.0
-0.4
-0.1
-3.8
no stress control
no stress control
+0.1
-0.0
-0.6
-0.2
-4.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
+0.1
-0.2
-0.3
-3.8
no stress control
no stress control
-0.6
+0.1
-0.2
-0.0
-3.8
no stress control
no stress control
-0.1
+0.1
-0.2
-0.0
-4.3
no stress control
no stress control
-0.2
+0.0
-0.5
+0.2
-3.9
pH
R2A_PIPES pH 4.5
-0.1
+0.0
-0.7
+0.0
-3.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
+0.1
+0.3
-0.1
-3.9
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
+0.2
-0.5
+0.0
-3.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.2
-0.6
+0.1
-3.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
-0.3
-0.1
-3.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.5
+0.1
-0.4
+0.0
-3.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.1
+0.1
+0.1
+0.0
-2.8
pH
R2A_PIPES pH 4.25
+0.4
+0.4
-0.4
-0.2
-3.9
pH
R2A_PIPES pH 4.25
+0.4
+0.3
-0.2
-0.2
-4.0
pH
R2A_PIPES pH 4.5
+0.3
+0.1
-0.6
+0.0
-3.5
no stress control
no stress control
+0.1
+0.3
-0.0
+0.1
-3.9
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.2
-0.3
-0.0
-3.3
no stress control
no stress control
-0.0
+0.1
-0.3
-0.1
-3.1
no stress control
no stress control
+0.3
+0.1
-0.4
+0.0
-3.0
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