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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS14385 and LRK55_RS14390 are separated by 2 nucleotides
LRK55_RS14390 and LRK55_RS14395 are separated by 184 nucleotides
LRK55_RS14395 and LRK55_RS14400 are separated by 84 nucleotides
LRK55_RS14400 and LRK55_RS14405 are separated by 13 nucleotides
LRK55_RS14385: LRK55_RS14385 - NrsF family protein, at 3,173,213 to 3,173,866
_RS14385
LRK55_RS14390: LRK55_RS14390 - YajQ family cyclic di-GMP-binding protein, at 3,173,869 to 3,174,351
_RS14390
LRK55_RS14395: LRK55_RS14395 - NAD(P)/FAD-dependent oxidoreductase, at 3,174,536 to 3,175,714
_RS14395
LRK55_RS14400: LRK55_RS14400 - NAD(P)-dependent oxidoreductase, at 3,175,799 to 3,176,683
_RS14400
LRK55_RS14405: LRK55_RS14405 - PhzF family phenazine biosynthesis protein, at 3,176,697 to 3,177,575
_RS14405
Group
Condition
LRK55
_RS14385
LRK55
_RS14390
LRK55
_RS14395
LRK55
_RS14400
LRK55
_RS14405
stress
R2A with Zinc chloride 2560 uM
-4.4
-0.4
+0.1
+0.2
+0.0
no stress control
no stress control
-3.9
-0.1
+0.4
-0.2
-0.3
pH
R2A_PIPES pH 4.25
-3.5
-0.9
-0.1
-0.3
+0.8
stress
R2A_PIPES with Cadmium chloride 64 uM
-4.0
+0.0
+0.0
+0.2
-0.0
stress
R2A with Zinc chloride 2560 uM
-3.1
+0.0
-0.1
+0.2
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.3
-0.4
-0.1
+0.2
-0.1
pH
R2A_PIPES pH 4.25
-3.0
+0.5
+0.1
+0.2
-0.6
no stress control
no stress control
-1.9
-0.1
-0.4
-0.2
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-1.7
-0.4
-0.4
+0.1
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-2.0
+0.2
-0.1
-0.2
-0.1
pH
R2A_PIPES pH 4.5
-2.1
+0.1
+0.2
+0.2
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-2.0
+0.4
-0.4
-0.2
+0.1
no stress control
no stress control
-1.7
+0.3
-0.2
-0.2
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.6
-0.0
-0.2
-0.0
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.4
-0.5
+0.4
+0.0
-0.1
no stress control
no stress control
-0.9
-0.1
+0.0
-0.4
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-1.5
-0.1
+0.4
-0.2
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.5
+0.0
+0.1
+0.2
-0.1
no stress control
no stress control
-1.2
-0.3
+0.1
+0.4
-0.2
pH
R2A_PIPES pH 4.5
-1.4
-0.0
+0.3
+0.2
-0.2
no stress control
no stress control
-0.8
+0.1
+0.0
-0.1
-0.1
no stress control
no stress control
-1.0
+0.1
+0.0
+0.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.7
+0.0
+0.4
+0.1
-0.1
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