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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS14300 and LRK55_RS14305 are separated by 30 nucleotides
LRK55_RS14305 and LRK55_RS14310 are separated by 90 nucleotides
LRK55_RS14310 and LRK55_RS14315 overlap by 4 nucleotides
LRK55_RS14315 and LRK55_RS14320 are separated by 62 nucleotides
LRK55_RS14300: LRK55_RS14300 - AraC family transcriptional regulator, at 3,157,401 to 3,158,237
_RS14300
LRK55_RS14305: LRK55_RS14305 - N-acetylmuramoyl-L-alanine amidase, at 3,158,268 to 3,158,822
_RS14305
LRK55_RS14310: LRK55_RS14310 - alpha/beta hydrolase, at 3,158,913 to 3,159,440
_RS14310
LRK55_RS14315: LRK55_RS14315 - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 3,159,437 to 3,161,623
_RS14315
LRK55_RS14320: LRK55_RS14320 - hypothetical protein, at 3,161,686 to 3,162,111
_RS14320
Group
Condition
LRK55
_RS14300
LRK55
_RS14305
LRK55
_RS14310
LRK55
_RS14315
LRK55
_RS14320
pH
R2A_PIPES pH 4.25
-0.1
-4.0
-2.6
-0.1
-2.6
pH
R2A_PIPES pH 4.25
-0.2
-3.7
-1.9
-0.2
-2.7
pH
R2A_PIPES pH 4.5
-0.1
-5.2
-0.2
-0.0
-0.7
pH
R2A_PIPES pH 4.5
-0.0
-4.7
-0.4
+0.1
-0.5
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-4.7
+0.1
-0.1
-0.1
stress
R2A with Zinc chloride 2560 uM
-0.0
-4.1
-0.6
+0.2
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-4.6
+0.7
-0.1
+0.0
no stress control
no stress control
-0.0
-3.6
-0.3
-0.1
+0.1
no stress control
no stress control
+0.0
-3.6
-0.2
-0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
-3.7
-0.2
-0.0
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-4.0
+0.0
-0.1
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-3.4
+0.3
-0.0
-0.0
no stress control
no stress control
+0.1
-3.3
-0.3
-0.0
+0.1
no stress control
no stress control
+0.2
-3.6
+0.1
+0.0
-0.0
stress
R2A with Zinc chloride 2560 uM
+0.1
-3.9
+0.2
+0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-2.4
-0.6
-0.1
+0.0
no stress control
no stress control
-0.1
-2.8
-0.1
-0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-3.3
+0.1
+0.3
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
-3.3
+0.1
+0.1
+0.1
no stress control
no stress control
-0.1
-3.3
+0.7
-0.0
+0.0
no stress control
no stress control
-0.4
-3.2
+1.0
+0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-2.7
+0.4
+0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-1.2
+0.1
+0.1
-0.2
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