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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS13625 and LRK55_RS13630 are separated by 1 nucleotides
LRK55_RS13630 and LRK55_RS13635 are separated by 23 nucleotides
LRK55_RS13635 and LRK55_RS13640 are separated by 192 nucleotides
LRK55_RS13640 and LRK55_RS13645 overlap by 4 nucleotides
LRK55_RS13625: LRK55_RS13625 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA, at 3,028,104 to 3,028,619
_RS13625
LRK55_RS13630: LRK55_RS13630 - beta-ketoacyl-ACP synthase I, at 3,028,621 to 3,029,829
_RS13630
LRK55_RS13635: LRK55_RS13635 - hemolysin III family protein, at 3,029,853 to 3,030,512
_RS13635
LRK55_RS13640: LRK55_RS13640 - deoxyribose-phosphate aldolase, at 3,030,705 to 3,031,463
_RS13640
LRK55_RS13645: LRK55_RS13645 - thymidine phosphorylase, at 3,031,460 to 3,032,542
_RS13645
Group
Condition
LRK55
_RS13625
LRK55
_RS13630
LRK55
_RS13635
LRK55
_RS13640
LRK55
_RS13645
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.9
-3.3
-0.0
-0.5
+0.6
stress
R2A with Zinc chloride 2560 uM
-2.5
-4.2
+0.0
-0.5
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-4.1
-2.6
-0.2
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
-3.7
-3.1
-0.1
+0.2
+0.3
no stress control
no stress control
-4.4
-1.9
-0.1
+0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.8
-2.3
-0.0
-0.7
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-3.6
-3.0
+0.3
+0.4
+0.0
pH
R2A_PIPES pH 4.25
-2.0
-3.2
+0.3
-1.5
+0.6
no stress control
no stress control
-4.2
-2.2
+0.1
+0.6
-0.1
pH
R2A_PIPES pH 4.25
-2.6
-3.5
+0.1
+0.5
-0.2
no stress control
no stress control
-2.9
-2.5
+0.0
-0.0
-0.0
pH
R2A_PIPES pH 4.5
-2.9
-3.2
+0.2
+0.2
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-2.6
-2.7
+0.0
+0.0
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.5
-2.7
-0.1
+0.2
+0.1
no stress control
no stress control
-2.5
-2.4
-0.0
-0.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-2.5
-2.7
-0.2
+0.7
+0.2
pH
R2A_PIPES pH 4.5
-2.9
-2.7
+0.3
+0.5
+0.4
stress
R2A with Nickel (II) chloride 1696 uM
-2.3
-2.4
-0.0
+0.6
+0.0
no stress control
no stress control
-2.7
-1.8
+0.0
+0.1
+0.2
no stress control
no stress control
-1.4
-1.9
-0.0
+0.0
-0.3
no stress control
no stress control
-1.8
-2.1
-0.0
+0.5
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.5
-2.0
+0.0
+0.2
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-2.3
-1.1
+0.0
+0.3
+0.2
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