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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
1
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS13575 and LRK55_RS13580 are separated by 16 nucleotides
LRK55_RS13580 and LRK55_RS13585 are separated by 438 nucleotides
LRK55_RS13585 and LRK55_RS13590 are separated by 126 nucleotides
LRK55_RS13590 and LRK55_RS13595 are separated by 218 nucleotides
LRK55_RS13575: LRK55_RS13575 - GGDEF domain-containing protein, at 3,015,601 to 3,017,406
_RS13575
LRK55_RS13580: LRK55_RS13580 - HAMP domain-containing methyl-accepting chemotaxis protein, at 3,017,423 to 3,019,036
_RS13580
LRK55_RS13585: LRK55_RS13585 - helix-turn-helix domain-containing protein, at 3,019,475 to 3,020,236
_RS13585
LRK55_RS13590: LRK55_RS13590 - copper-containing nitrite reductase, at 3,020,363 to 3,021,880
_RS13590
LRK55_RS13595: LRK55_RS13595 - alginate export family protein, at 3,022,099 to 3,023,358
_RS13595
Group
Condition
LRK55
_RS13575
LRK55
_RS13580
LRK55
_RS13585
LRK55
_RS13590
LRK55
_RS13595
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.5
-0.2
+0.2
+0.0
pH
R2A_PIPES pH 4.25
+0.1
-0.5
-0.0
-0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.2
+0.0
-0.1
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.0
-0.2
-0.0
+0.1
no stress control
no stress control
+0.1
-0.2
-0.2
+0.1
-0.0
no stress control
no stress control
+0.1
+0.1
-0.1
+0.1
-0.3
no stress control
no stress control
+0.0
-0.0
-0.0
-0.0
-0.2
no stress control
no stress control
-0.1
-0.1
+0.0
-0.0
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.1
-0.3
+0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.1
-0.1
+0.2
+0.0
no stress control
no stress control
-0.1
-0.0
-0.2
+0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.3
+0.1
+0.2
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.1
-0.0
+0.2
+0.2
pH
R2A_PIPES pH 4.25
-0.1
-0.0
+0.1
+0.0
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.1
+0.0
-0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.1
-0.0
+0.2
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.2
-0.0
+0.1
+0.2
-0.2
no stress control
no stress control
+0.1
+0.1
-0.1
+0.1
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.1
-0.0
+0.1
+0.1
pH
R2A_PIPES pH 4.5
+0.1
+0.0
+0.0
+0.2
+0.0
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.2
-0.1
+0.1
+0.3
no stress control
no stress control
+0.1
+0.2
+0.1
+0.3
+0.0
pH
R2A_PIPES pH 4.5
+0.1
+0.2
+0.3
+0.2
+0.3
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