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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS13530 and LRK55_RS13535 are separated by 67 nucleotides
LRK55_RS13535 and LRK55_RS13540 are separated by 113 nucleotides
LRK55_RS13540 and LRK55_RS13545 overlap by 4 nucleotides
LRK55_RS13545 and LRK55_RS13550 are separated by 65 nucleotides
LRK55_RS13530: LRK55_RS13530 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,004,581 to 3,005,735
_RS13530
LRK55_RS13535: LRK55_RS13535 - Fe-Mn family superoxide dismutase, at 3,005,803 to 3,006,396
_RS13535
LRK55_RS13540: LRK55_RS13540 - Grx4 family monothiol glutaredoxin, at 3,006,510 to 3,006,833
_RS13540
LRK55_RS13545: LRK55_RS13545 - SDR family NAD(P)-dependent oxidoreductase, at 3,006,830 to 3,007,600
_RS13545
LRK55_RS13550: LRK55_RS13550 - YhgN family NAAT transporter, at 3,007,666 to 3,008,265
_RS13550
Group
Condition
LRK55
_RS13530
LRK55
_RS13535
LRK55
_RS13540
LRK55
_RS13545
LRK55
_RS13550
stress
R2A with Zinc chloride 2560 uM
-4.2
N.D.
N.D.
-3.5
-2.7
stress
R2A with Zinc chloride 2560 uM
-3.6
N.D.
N.D.
-3.5
-2.0
no stress control
no stress control
-3.9
N.D.
N.D.
-0.6
-3.5
pH
R2A_PIPES pH 4.25
-3.3
N.D.
N.D.
-1.8
-2.8
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-3.2
N.D.
N.D.
-1.5
-3.2
no stress control
no stress control
-3.8
N.D.
N.D.
-0.5
-2.9
pH
R2A_PIPES pH 4.5
-3.2
N.D.
N.D.
-1.4
-2.6
no stress control
no stress control
-3.9
N.D.
N.D.
-0.5
-2.8
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-3.4
N.D.
N.D.
-1.0
-2.3
pH
R2A_PIPES pH 4.25
-2.4
N.D.
N.D.
-1.9
-2.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.6
N.D.
N.D.
-0.1
-2.9
no stress control
no stress control
-3.7
N.D.
N.D.
-0.6
-2.1
pH
R2A_PIPES pH 4.5
-3.3
N.D.
N.D.
-1.0
-2.0
no stress control
no stress control
-3.6
N.D.
N.D.
-0.4
-2.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.5
N.D.
N.D.
-0.2
-2.4
stress
R2A with Nickel (II) chloride 1696 uM
-3.5
N.D.
N.D.
-0.4
-2.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.4
N.D.
N.D.
-0.4
-2.3
stress
R2A with Nickel (II) chloride 1696 uM
-2.8
N.D.
N.D.
-0.2
-3.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-3.5
N.D.
N.D.
+0.1
-2.5
no stress control
no stress control
-3.2
N.D.
N.D.
-0.6
-1.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-3.2
N.D.
N.D.
-0.7
-1.7
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.8
N.D.
N.D.
-0.4
-1.8
no stress control
no stress control
-2.9
N.D.
N.D.
-0.3
-1.4
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