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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12940 and LRK55_RS12945 are separated by 176 nucleotides
LRK55_RS12945 and LRK55_RS12950 are separated by 145 nucleotides
LRK55_RS12950 and LRK55_RS12955 are separated by 529 nucleotides
LRK55_RS12955 and LRK55_RS12960 overlap by 4 nucleotides
LRK55_RS12940: LRK55_RS12940 - hypothetical protein, at 2,886,864 to 2,887,727
_RS12940
LRK55_RS12945: LRK55_RS12945 - hypothetical protein, at 2,887,904 to 2,889,631
_RS12945
LRK55_RS12950: LRK55_RS12950 - hypothetical protein, at 2,889,777 to 2,892,068
_RS12950
LRK55_RS12955: LRK55_RS12955 - phosphatidylserine decarboxylase, at 2,892,598 to 2,893,287
_RS12955
LRK55_RS12960: LRK55_RS12960 - hypothetical protein, at 2,893,284 to 2,893,481
_RS12960
Group
Condition
LRK55
_RS12940
LRK55
_RS12945
LRK55
_RS12950
LRK55
_RS12955
LRK55
_RS12960
stress
R2A with Nickel (II) chloride 1696 uM
-0.7
-0.5
-0.3
-0.1
-0.7
pH
R2A_PIPES pH 4.25
-0.5
-0.4
-0.1
-0.1
-0.8
pH
R2A_PIPES pH 4.5
-0.6
-0.3
-0.2
-0.1
-0.4
no stress control
no stress control
-0.2
-0.2
-0.1
-0.3
-0.6
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
-0.3
-0.2
-0.1
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
-0.3
-0.2
+0.2
-0.4
no stress control
no stress control
-0.4
-0.1
-0.1
-0.1
-0.1
pH
R2A_PIPES pH 4.25
-0.6
-0.4
-0.3
+0.0
+0.4
stress
R2A with Zinc chloride 2560 uM
-0.3
-0.1
-0.1
+0.0
-0.4
no stress control
no stress control
-0.3
-0.1
-0.1
+0.2
-0.3
no stress control
no stress control
-0.3
-0.2
-0.1
-0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.2
-0.1
-0.2
+0.3
pH
R2A_PIPES pH 4.5
-0.2
-0.1
-0.0
-0.2
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.1
-0.1
+0.1
-0.0
no stress control
no stress control
-0.3
-0.3
+0.0
+0.3
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.2
-0.1
+0.2
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.1
-0.2
+0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-0.1
-0.1
+0.3
-0.1
no stress control
no stress control
-0.1
-0.1
-0.0
+0.1
+0.1
no stress control
no stress control
-0.1
-0.1
-0.0
+0.0
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.2
-0.0
+0.4
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.4
-0.1
+0.0
+0.3
+0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.0
+0.0
+0.3
+0.0
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LRK55_RS12950
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