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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12745 and LRK55_RS12750 overlap by 4 nucleotides
LRK55_RS12750 and LRK55_RS12755 are separated by 246 nucleotides
LRK55_RS12755 and LRK55_RS12760 are separated by 163 nucleotides
LRK55_RS12760 and LRK55_RS12765 are separated by 88 nucleotides
LRK55_RS12745: LRK55_RS12745 - MFS transporter, at 2,832,298 to 2,833,815
_RS12745
LRK55_RS12750: LRK55_RS12750 - Six-hairpin glycosidase-like protein, at 2,833,812 to 2,836,001
_RS12750
LRK55_RS12755: LRK55_RS12755 - glycosyl hydrolase family 39, at 2,836,248 to 2,837,804
_RS12755
LRK55_RS12760: LRK55_RS12760 - glycoside hydrolase family 13 protein, at 2,837,968 to 2,839,995
_RS12760
LRK55_RS12765: LRK55_RS12765 - glycoside hydrolase family 31 protein, at 2,840,084 to 2,842,333
_RS12765
Group
Condition
LRK55
_RS12745
LRK55
_RS12750
LRK55
_RS12755
LRK55
_RS12760
LRK55
_RS12765
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.1
+0.0
-0.2
-0.1
pH
R2A_PIPES pH 4.25
-0.3
+0.1
+0.1
-0.0
+0.1
pH
R2A_PIPES pH 4.5
-0.1
+0.1
+0.1
+0.0
+0.0
no stress control
no stress control
-0.1
-0.0
+0.1
+0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.0
+0.0
-0.1
+0.0
no stress control
no stress control
+0.2
+0.1
-0.1
-0.1
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.0
+0.2
+0.0
+0.0
no stress control
no stress control
+0.0
+0.1
+0.2
+0.0
+0.0
no stress control
no stress control
+0.3
-0.1
+0.1
+0.1
+0.1
no stress control
no stress control
+0.3
+0.1
+0.2
-0.1
-0.0
no stress control
no stress control
+0.1
+0.2
+0.1
+0.1
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.1
+0.1
+0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.7
+0.2
+0.0
+0.0
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.6
+0.3
-0.0
-0.1
+0.1
pH
R2A_PIPES pH 4.25
+0.1
+0.3
+0.2
+0.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
+0.3
+0.0
-0.1
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.3
+0.2
+0.0
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.2
+0.3
+0.1
+0.1
no stress control
no stress control
+0.4
+0.2
+0.1
+0.2
+0.2
pH
R2A_PIPES pH 4.5
+0.3
+0.3
+0.2
+0.2
+0.3
stress
R2A with Zinc chloride 2560 uM
+0.6
+0.3
+0.3
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.9
+0.3
+0.3
+0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.9
+0.4
+0.1
+0.1
+0.4
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