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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12630 and LRK55_RS12635 are separated by 46 nucleotides
LRK55_RS12635 and LRK55_RS12640 are separated by 34 nucleotides
LRK55_RS12640 and LRK55_RS12645 are separated by 8 nucleotides
LRK55_RS12645 and LRK55_RS12650 are separated by 167 nucleotides
LRK55_RS12630: LRK55_RS12630 - DUF2182 domain-containing protein, at 2,808,770 to 2,809,522
_RS12630
LRK55_RS12635: LRK55_RS12635 - DUF3108 domain-containing protein, at 2,809,569 to 2,810,276
_RS12635
LRK55_RS12640: LRK55_RS12640 - phosphoribosylglycinamide formyltransferase, at 2,810,311 to 2,810,976
_RS12640
LRK55_RS12645: LRK55_RS12645 - phosphoribosylformylglycinamidine cyclo-ligase, at 2,810,985 to 2,812,013
_RS12645
LRK55_RS12650: LRK55_RS12650 - DUF2066 domain-containing protein, at 2,812,181 to 2,813,161
_RS12650
Group
Condition
LRK55
_RS12630
LRK55
_RS12635
LRK55
_RS12640
LRK55
_RS12645
LRK55
_RS12650
pH
R2A_PIPES pH 4.25
-0.1
-0.2
+0.1
-3.4
-1.5
pH
R2A_PIPES pH 4.25
+0.5
-0.1
-0.5
-3.0
-2.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
+0.0
+0.3
-4.0
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.0
+0.0
-3.0
-0.7
pH
R2A_PIPES pH 4.5
+0.1
+0.2
+0.3
-3.5
-0.5
pH
R2A_PIPES pH 4.5
+0.4
+0.2
+0.1
-2.8
-1.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
+0.1
+0.2
-3.3
+0.4
no stress control
no stress control
-0.2
+0.1
+0.2
-2.4
-0.6
no stress control
no stress control
+0.0
+0.0
+0.1
-2.6
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.1
+0.4
-3.2
+0.1
no stress control
no stress control
-0.0
+0.1
+0.1
-2.4
-0.3
no stress control
no stress control
-0.3
+0.1
-0.0
-2.3
-0.0
no stress control
no stress control
+0.0
-0.1
+0.2
-2.3
-0.2
no stress control
no stress control
+0.1
+0.1
-0.0
-2.4
-0.2
no stress control
no stress control
+0.1
+0.1
-0.0
-2.2
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.1
-0.0
-2.2
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.0
-0.1
-2.1
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.4
-0.1
+0.4
-2.0
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
-0.0
-2.3
+0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.2
+0.3
-1.8
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.1
+0.1
-1.5
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.1
+0.2
-1.4
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.4
+0.1
+0.2
-1.6
+0.3
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