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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12365 and LRK55_RS12370 are separated by 85 nucleotides
LRK55_RS12370 and LRK55_RS12375 overlap by 4 nucleotides
LRK55_RS12375 and LRK55_RS12380 overlap by 1 nucleotides
LRK55_RS12380 and LRK55_RS12385 are separated by 212 nucleotides
LRK55_RS12365: LRK55_RS12365 - bifunctional aspartate kinase/diaminopimelate decarboxylase, at 2,747,273 to 2,749,834
_RS12365
LRK55_RS12370: LRK55_RS12370 - endonuclease domain-containing protein, at 2,749,920 to 2,750,324
_RS12370
LRK55_RS12375: LRK55_RS12375 - UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase, at 2,750,321 to 2,751,661
_RS12375
LRK55_RS12380: LRK55_RS12380 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 2,751,661 to 2,753,034
_RS12380
LRK55_RS12385: LRK55_RS12385 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 2,753,247 to 2,753,360
_RS12385
Group
Condition
LRK55
_RS12365
LRK55
_RS12370
LRK55
_RS12375
LRK55
_RS12380
LRK55
_RS12385
pH
R2A_PIPES pH 4.5
-1.6
+0.1
N.D.
N.D.
N.D.
stress
R2A with Zinc chloride 2560 uM
-1.4
-0.1
N.D.
N.D.
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.2
-0.1
N.D.
N.D.
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.3
+0.0
N.D.
N.D.
N.D.
pH
R2A_PIPES pH 4.25
-1.7
+0.6
N.D.
N.D.
N.D.
pH
R2A_PIPES pH 4.25
-1.9
+0.7
N.D.
N.D.
N.D.
no stress control
no stress control
-0.6
-0.1
N.D.
N.D.
N.D.
stress
R2A with Zinc chloride 2560 uM
-1.1
+0.5
N.D.
N.D.
N.D.
no stress control
no stress control
-0.7
+0.1
N.D.
N.D.
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.5
-0.1
N.D.
N.D.
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.0
+0.4
N.D.
N.D.
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.6
+0.0
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.7
+0.2
N.D.
N.D.
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.7
+0.2
N.D.
N.D.
N.D.
pH
R2A_PIPES pH 4.5
-1.1
+0.6
N.D.
N.D.
N.D.
no stress control
no stress control
-0.5
+0.0
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.7
+0.2
N.D.
N.D.
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.9
+0.5
N.D.
N.D.
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.7
+0.3
N.D.
N.D.
N.D.
no stress control
no stress control
-0.5
+0.1
N.D.
N.D.
N.D.
no stress control
no stress control
-0.5
+0.2
N.D.
N.D.
N.D.
no stress control
no stress control
-0.6
+0.3
N.D.
N.D.
N.D.
no stress control
no stress control
-0.6
+0.5
N.D.
N.D.
N.D.
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