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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12350 and LRK55_RS12355 are separated by 158 nucleotides
LRK55_RS12355 and LRK55_RS12360 are separated by 215 nucleotides
LRK55_RS12360 and LRK55_RS12365 are separated by 325 nucleotides
LRK55_RS12365 and LRK55_RS12370 are separated by 85 nucleotides
LRK55_RS12350: LRK55_RS12350 - PhzF family phenazine biosynthesis protein, at 2,743,551 to 2,744,429
_RS12350
LRK55_RS12355: LRK55_RS12355 - outer membrane beta-barrel protein, at 2,744,588 to 2,745,214
_RS12355
LRK55_RS12360: LRK55_RS12360 - fumarate hydratase, at 2,745,430 to 2,746,947
_RS12360
LRK55_RS12365: LRK55_RS12365 - bifunctional aspartate kinase/diaminopimelate decarboxylase, at 2,747,273 to 2,749,834
_RS12365
LRK55_RS12370: LRK55_RS12370 - endonuclease domain-containing protein, at 2,749,920 to 2,750,324
_RS12370
Group
Condition
LRK55
_RS12350
LRK55
_RS12355
LRK55
_RS12360
LRK55
_RS12365
LRK55
_RS12370
no stress control
no stress control
+0.2
-0.2
+0.1
-0.6
-0.1
pH
R2A_PIPES pH 4.5
+0.2
+0.2
+0.5
-1.6
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.0
+0.2
-0.5
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.5
+0.0
+0.3
-1.3
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.5
+0.0
+0.4
-1.2
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.4
-0.1
+0.6
-1.4
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.0
+0.2
-0.7
+0.2
no stress control
no stress control
-0.1
+0.2
+0.1
-0.5
+0.0
no stress control
no stress control
+0.1
-0.1
+0.1
-0.5
+0.2
no stress control
no stress control
-0.0
-0.0
+0.1
-0.6
+0.3
no stress control
no stress control
+0.4
-0.0
+0.2
-0.7
+0.1
no stress control
no stress control
+0.2
-0.0
+0.1
-0.5
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
+0.3
-0.7
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
+0.1
+0.3
-0.6
+0.0
pH
R2A_PIPES pH 4.5
+0.2
-0.1
+0.5
-1.1
+0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.1
+0.7
-1.0
+0.4
pH
R2A_PIPES pH 4.25
+0.2
+0.1
+1.0
-1.9
+0.7
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.5
+0.0
+0.3
-0.7
+0.3
pH
R2A_PIPES pH 4.25
-0.1
+0.3
+1.3
-1.7
+0.6
stress
R2A with Zinc chloride 2560 uM
+0.5
+0.1
+0.5
-1.1
+0.5
no stress control
no stress control
+0.3
+0.1
+0.3
-0.6
+0.5
stress
R2A with Nickel (II) chloride 1696 uM
+0.5
+0.1
+0.4
-0.7
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.0
+0.9
-0.9
+0.5
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